miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14105 5' -56.3 NC_003521.1 + 2181 0.66 0.936994
Target:  5'- gUUGCAgCaACCGCC-CGUUCGG-GGAAc -3'
miRNA:   3'- -AAUGUgG-UGGCGGuGCGAGCCuUCUU- -5'
14105 5' -56.3 NC_003521.1 + 3755 0.69 0.831459
Target:  5'- cUAgACCGCCG-CAUGCUCGGAc--- -3'
miRNA:   3'- aAUgUGGUGGCgGUGCGAGCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 11849 0.67 0.910134
Target:  5'- cUGCGCCGcCCGCgCACcucCUCGGAcgAGGAg -3'
miRNA:   3'- aAUGUGGU-GGCG-GUGc--GAGCCU--UCUU- -5'
14105 5' -56.3 NC_003521.1 + 12117 0.72 0.662258
Target:  5'- -cAUGCCGCCGCCGCGCuccuUCGGGu--- -3'
miRNA:   3'- aaUGUGGUGGCGGUGCG----AGCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 13875 0.66 0.926423
Target:  5'- -gGCGgCGCCGCCAuggauuuCGC-CGGggGGc -3'
miRNA:   3'- aaUGUgGUGGCGGU-------GCGaGCCuuCUu -5'
14105 5' -56.3 NC_003521.1 + 14397 0.68 0.877537
Target:  5'- -cGCGCUACggcgUGUCGCGCUCGG-AGAu -3'
miRNA:   3'- aaUGUGGUG----GCGGUGCGAGCCuUCUu -5'
14105 5' -56.3 NC_003521.1 + 16737 0.69 0.831459
Target:  5'- -gGCgACCGCCGgCGCGCgcgcccgcCGGAGGAc -3'
miRNA:   3'- aaUG-UGGUGGCgGUGCGa-------GCCUUCUu -5'
14105 5' -56.3 NC_003521.1 + 17455 0.74 0.551644
Target:  5'- ---aACCGCgGCaGCGCUCGGAGGAGa -3'
miRNA:   3'- aaugUGGUGgCGgUGCGAGCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 21182 0.74 0.551644
Target:  5'- -cACuCCGCCGagaCGCGUUCGGAGGGAg -3'
miRNA:   3'- aaUGuGGUGGCg--GUGCGAGCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 22747 0.69 0.788148
Target:  5'- -gGCGCCGCCGCCuCGCUgugcuucgagaCGGuGGAc -3'
miRNA:   3'- aaUGUGGUGGCGGuGCGA-----------GCCuUCUu -5'
14105 5' -56.3 NC_003521.1 + 24105 0.67 0.903445
Target:  5'- --cCGCCaauccggGCCGCCagagACGUUCGGAGGGc -3'
miRNA:   3'- aauGUGG-------UGGCGG----UGCGAGCCUUCUu -5'
14105 5' -56.3 NC_003521.1 + 27762 0.66 0.921577
Target:  5'- ---uGCCGuCCGCCgaGCGCggaGGAAGAAa -3'
miRNA:   3'- aaugUGGU-GGCGG--UGCGag-CCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 29340 0.68 0.839621
Target:  5'- --uUACCGCUGCCACGCgcacUGGAcGGAg -3'
miRNA:   3'- aauGUGGUGGCGGUGCGa---GCCUuCUU- -5'
14105 5' -56.3 NC_003521.1 + 33341 0.66 0.932088
Target:  5'- --cCACCACCucguccacguaGUCGCGCUC-GAAGAAg -3'
miRNA:   3'- aauGUGGUGG-----------CGGUGCGAGcCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 35933 0.69 0.789052
Target:  5'- --cCACCGucCCGCCGCGCggccaaucgcgaaagCGGAGGAu -3'
miRNA:   3'- aauGUGGU--GGCGGUGCGa--------------GCCUUCUu -5'
14105 5' -56.3 NC_003521.1 + 40247 0.66 0.94121
Target:  5'- -gGCGCCGCCuccggcaGCuCACGCUUGGuuGGc -3'
miRNA:   3'- aaUGUGGUGG-------CG-GUGCGAGCCuuCUu -5'
14105 5' -56.3 NC_003521.1 + 40714 0.68 0.877537
Target:  5'- aUGCACCACauCGCgGCGCUCGaGAc--- -3'
miRNA:   3'- aAUGUGGUG--GCGgUGCGAGC-CUucuu -5'
14105 5' -56.3 NC_003521.1 + 44094 0.67 0.8845
Target:  5'- -gGCGCCGCCGCCAccaccgucgcCGC-CGGu-GAAg -3'
miRNA:   3'- aaUGUGGUGGCGGU----------GCGaGCCuuCUU- -5'
14105 5' -56.3 NC_003521.1 + 44257 0.67 0.897768
Target:  5'- -gAguCCGgCGUCACGC-CGGAGGAGa -3'
miRNA:   3'- aaUguGGUgGCGGUGCGaGCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 46817 0.68 0.862224
Target:  5'- -gACGCCGCCGCCggugacgACGCU--GAAGGAg -3'
miRNA:   3'- aaUGUGGUGGCGG-------UGCGAgcCUUCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.