miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14105 5' -56.3 NC_003521.1 + 184908 0.69 0.814612
Target:  5'- -gGCACCcccguuGCCGCCGCcgUCGGAGGGu -3'
miRNA:   3'- aaUGUGG------UGGCGGUGcgAGCCUUCUu -5'
14105 5' -56.3 NC_003521.1 + 69217 0.7 0.760451
Target:  5'- -gGCACUcCCGCCGcCGCUCGGGu--- -3'
miRNA:   3'- aaUGUGGuGGCGGU-GCGAGCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 102794 0.7 0.760451
Target:  5'- -cGCGCCggcgGCCGCCA-GCUCGGgcGGc -3'
miRNA:   3'- aaUGUGG----UGGCGGUgCGAGCCuuCUu -5'
14105 5' -56.3 NC_003521.1 + 129319 0.7 0.769806
Target:  5'- gUGCGCCGCCGCCGCcagcccGCUggucaGGAAGu- -3'
miRNA:   3'- aAUGUGGUGGCGGUG------CGAg----CCUUCuu -5'
14105 5' -56.3 NC_003521.1 + 165898 0.69 0.788148
Target:  5'- gUACACCACC-CCGCGCUgcCGGGc--- -3'
miRNA:   3'- aAUGUGGUGGcGGUGCGA--GCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 35933 0.69 0.789052
Target:  5'- --cCACCGucCCGCCGCGCggccaaucgcgaaagCGGAGGAu -3'
miRNA:   3'- aauGUGGU--GGCGGUGCGa--------------GCCUUCUu -5'
14105 5' -56.3 NC_003521.1 + 103788 0.69 0.805942
Target:  5'- -cGCACuCGCCGCCGUGCUcCGGcGAGAu -3'
miRNA:   3'- aaUGUG-GUGGCGGUGCGA-GCC-UUCUu -5'
14105 5' -56.3 NC_003521.1 + 223818 0.69 0.805942
Target:  5'- cUGCGCCGCCGCCAC-CgCGGGc--- -3'
miRNA:   3'- aAUGUGGUGGCGGUGcGaGCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 163251 0.69 0.814612
Target:  5'- -aACAUCAgCGUCGgGCUCGGcAAGAAc -3'
miRNA:   3'- aaUGUGGUgGCGGUgCGAGCC-UUCUU- -5'
14105 5' -56.3 NC_003521.1 + 162287 0.7 0.750985
Target:  5'- --uCugCACCGUCACGC-CGGGAGu- -3'
miRNA:   3'- aauGugGUGGCGGUGCGaGCCUUCuu -5'
14105 5' -56.3 NC_003521.1 + 156073 0.71 0.722009
Target:  5'- --uCGCCGCCGCCGCGCcCGaGcAAGAc -3'
miRNA:   3'- aauGUGGUGGCGGUGCGaGC-C-UUCUu -5'
14105 5' -56.3 NC_003521.1 + 129235 0.71 0.696339
Target:  5'- -gGCGCCGCUgGCCACGCgcggcaccuggaugUGGAAGAGc -3'
miRNA:   3'- aaUGUGGUGG-CGGUGCGa-------------GCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 17455 0.74 0.551644
Target:  5'- ---aACCGCgGCaGCGCUCGGAGGAGa -3'
miRNA:   3'- aaugUGGUGgCGgUGCGAGCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 130760 0.73 0.581527
Target:  5'- -gGCGCgAgCGCCGCGC-CGGggGAGc -3'
miRNA:   3'- aaUGUGgUgGCGGUGCGaGCCuuCUU- -5'
14105 5' -56.3 NC_003521.1 + 144180 0.73 0.601636
Target:  5'- -gGCGCCGCCuGCCGCGCgCuGGAGAAc -3'
miRNA:   3'- aaUGUGGUGG-CGGUGCGaGcCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 103743 0.72 0.631947
Target:  5'- -cGCAgCACCGCCGCGUggUGGAAGu- -3'
miRNA:   3'- aaUGUgGUGGCGGUGCGa-GCCUUCuu -5'
14105 5' -56.3 NC_003521.1 + 226841 0.72 0.652167
Target:  5'- -cGC-CCGCCGCCGCGC-CGGGcAGGc -3'
miRNA:   3'- aaUGuGGUGGCGGUGCGaGCCU-UCUu -5'
14105 5' -56.3 NC_003521.1 + 12117 0.72 0.662258
Target:  5'- -cAUGCCGCCGCCGCGCuccuUCGGGu--- -3'
miRNA:   3'- aaUGUGGUGGCGGUGCG----AGCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 140121 0.71 0.68236
Target:  5'- -cACAgCGCCGCCACGUUgGuGAAGGc -3'
miRNA:   3'- aaUGUgGUGGCGGUGCGAgC-CUUCUu -5'
14105 5' -56.3 NC_003521.1 + 233739 0.71 0.692354
Target:  5'- -gACGCCGCCGCCGCGuCUgcuucuucucacCGGggGc- -3'
miRNA:   3'- aaUGUGGUGGCGGUGC-GA------------GCCuuCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.