miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14118 5' -60.4 NC_003521.1 + 209546 0.66 0.838905
Target:  5'- uUAUGCGCC---CGGCGGGGugGCg- -3'
miRNA:   3'- uGUGCGCGGagaGCCGCCUCugUGga -5'
14118 5' -60.4 NC_003521.1 + 166231 0.66 0.806781
Target:  5'- -gGCGCGCCgg-CcGCGG-GACGCCg -3'
miRNA:   3'- ugUGCGCGGagaGcCGCCuCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 100611 0.66 0.806781
Target:  5'- gGCgaaGCGUCUCUUGGCcGGGGgACCUc -3'
miRNA:   3'- -UGug-CGCGGAGAGCCGcCUCUgUGGA- -5'
14118 5' -60.4 NC_003521.1 + 48761 0.66 0.837359
Target:  5'- gACcCGCGUUUCUCGGCcacgcgauaaaAGACACCg -3'
miRNA:   3'- -UGuGCGCGGAGAGCCGcc---------UCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 150388 0.66 0.838905
Target:  5'- uACugGCgaaaGCUUUUCGGCGGcGACgaGCCc -3'
miRNA:   3'- -UGugCG----CGGAGAGCCGCCuCUG--UGGa -5'
14118 5' -60.4 NC_003521.1 + 84644 0.66 0.838905
Target:  5'- -gACGCGCCaC-CGGCG-AGAUGCCg -3'
miRNA:   3'- ugUGCGCGGaGaGCCGCcUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 139896 0.66 0.846534
Target:  5'- aGCGCGUccaGCUUCUgGuaGGAGGCGCgCUg -3'
miRNA:   3'- -UGUGCG---CGGAGAgCcgCCUCUGUG-GA- -5'
14118 5' -60.4 NC_003521.1 + 91307 0.66 0.838905
Target:  5'- uACGCGCGUaugCgugugCGcGCGGGGGCACg- -3'
miRNA:   3'- -UGUGCGCGga-Ga----GC-CGCCUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 111280 0.66 0.838905
Target:  5'- -uGCGCGgCUCccUCGGgcUGGGGGCACUg -3'
miRNA:   3'- ugUGCGCgGAG--AGCC--GCCUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 204067 0.66 0.846534
Target:  5'- cACGCGCGUC-CUUGGacagcgagaGGAagGGCACCg -3'
miRNA:   3'- -UGUGCGCGGaGAGCCg--------CCU--CUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 195402 0.66 0.838905
Target:  5'- gAC-CGCGCCga-CGGCGG--GCACCg -3'
miRNA:   3'- -UGuGCGCGGagaGCCGCCucUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 62365 0.66 0.837359
Target:  5'- uGCACGCGCuCUCgcgccccuucaaCGGaaccaCGGAGACGCa- -3'
miRNA:   3'- -UGUGCGCG-GAGa-----------GCC-----GCCUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 36403 0.66 0.80678
Target:  5'- uACAacaGCGCCUCgagCGuGaCGGAGAagGCCUc -3'
miRNA:   3'- -UGUg--CGCGGAGa--GC-C-GCCUCUg-UGGA- -5'
14118 5' -60.4 NC_003521.1 + 154650 0.66 0.81504
Target:  5'- aGCACGUGCCgCUggccgaggcCGGCaGcGAGACGCUg -3'
miRNA:   3'- -UGUGCGCGGaGA---------GCCG-C-CUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 75548 0.66 0.80678
Target:  5'- aGCG-GCGCCgg-CGGCGGcuACGCCa -3'
miRNA:   3'- -UGUgCGCGGagaGCCGCCucUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 224090 0.66 0.831108
Target:  5'- gGCGCGCGCg-C-CGGCGGu--CGCCg -3'
miRNA:   3'- -UGUGCGCGgaGaGCCGCCucuGUGGa -5'
14118 5' -60.4 NC_003521.1 + 55019 0.66 0.83032
Target:  5'- gGCGCaGCGCCagCgUCGGCGGcuccgagAGACGCg- -3'
miRNA:   3'- -UGUG-CGCGGa-G-AGCCGCC-------UCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 168534 0.66 0.838905
Target:  5'- gGCugGCgGCCagcgCGGCGGcGGCGCUg -3'
miRNA:   3'- -UGugCG-CGGaga-GCCGCCuCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 238453 0.66 0.81504
Target:  5'- gGCGCaggGCgGCCUCggcgggcggGGCGGAGACGCg- -3'
miRNA:   3'- -UGUG---CG-CGGAGag-------CCGCCUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 105868 0.66 0.823151
Target:  5'- gGCGCGUGCCcacgaUCagGGCGcAGAUGCCg -3'
miRNA:   3'- -UGUGCGCGG-----AGagCCGCcUCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.