Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14118 | 5' | -60.4 | NC_003521.1 | + | 120340 | 1.07 | 0.00259 |
Target: 5'- cACACGCGCCUCUCGGCGGAGACACCUg -3' miRNA: 3'- -UGUGCGCGGAGAGCCGCCUCUGUGGA- -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 135357 | 0.76 | 0.301716 |
Target: 5'- cGCGCGCGCCgUCUccgCGGCGGuuaucgcccgcGGGCGCCa -3' miRNA: 3'- -UGUGCGCGG-AGA---GCCGCC-----------UCUGUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 219647 | 0.75 | 0.32891 |
Target: 5'- -aACGCGU--CUCGGCGGAGugACCa -3' miRNA: 3'- ugUGCGCGgaGAGCCGCCUCugUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 80586 | 0.75 | 0.343172 |
Target: 5'- cGCGCGCGCCUUUCacgagaGGUGGAGACGg-- -3' miRNA: 3'- -UGUGCGCGGAGAG------CCGCCUCUGUgga -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 145853 | 0.74 | 0.388576 |
Target: 5'- -aACGCGUCUCUgggcccggCGGCGGGcGGCGCCg -3' miRNA: 3'- ugUGCGCGGAGA--------GCCGCCU-CUGUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 85131 | 0.74 | 0.404563 |
Target: 5'- gGCACGUaGCCUCccUCGGCGGcgauGACAUCg -3' miRNA: 3'- -UGUGCG-CGGAG--AGCCGCCu---CUGUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 195308 | 0.73 | 0.420958 |
Target: 5'- cCACGCccaguCCUCUCGGCGGAG-CGCa- -3' miRNA: 3'- uGUGCGc----GGAGAGCCGCCUCuGUGga -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 201003 | 0.73 | 0.420958 |
Target: 5'- aGCAgGCGCCa-UCGGCGGAGGacCGCCc -3' miRNA: 3'- -UGUgCGCGGagAGCCGCCUCU--GUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 776 | 0.73 | 0.420958 |
Target: 5'- aGCAgGCGCCa-UCGGCGGAGGacCGCCc -3' miRNA: 3'- -UGUgCGCGGagAGCCGCCUCU--GUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 205328 | 0.73 | 0.429305 |
Target: 5'- gACACccuacgGCGCCUcCUCGGCGGcGGCAgCUg -3' miRNA: 3'- -UGUG------CGCGGA-GAGCCGCCuCUGUgGA- -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 153639 | 0.73 | 0.437748 |
Target: 5'- aGCGgGUGCgUCUCGGUGGAG-CGCUg -3' miRNA: 3'- -UGUgCGCGgAGAGCCGCCUCuGUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 140729 | 0.73 | 0.454915 |
Target: 5'- cCGCGCGaguCCUCgUCGGCGGucgAGGCGCCc -3' miRNA: 3'- uGUGCGC---GGAG-AGCCGCC---UCUGUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 61262 | 0.73 | 0.454915 |
Target: 5'- cACACGCGCCUCUguuacugcuUGGCGcuGAGccgcgcGCACCUg -3' miRNA: 3'- -UGUGCGCGGAGA---------GCCGC--CUC------UGUGGA- -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 112467 | 0.73 | 0.463634 |
Target: 5'- -gGCGCGCC---CGGCGGGGcCACCUa -3' miRNA: 3'- ugUGCGCGGagaGCCGCCUCuGUGGA- -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 165878 | 0.72 | 0.508467 |
Target: 5'- uGCACGUG-CUCgggCGGCGGGuACACCa -3' miRNA: 3'- -UGUGCGCgGAGa--GCCGCCUcUGUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 112028 | 0.71 | 0.555028 |
Target: 5'- uCACGCGCCU---GGUGGAGGcCGCCa -3' miRNA: 3'- uGUGCGCGGAgagCCGCCUCU-GUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 140846 | 0.71 | 0.571157 |
Target: 5'- -gACGUGCUggagcgcuucgcggUCUCGGCcGAGGCGCCg -3' miRNA: 3'- ugUGCGCGG--------------AGAGCCGcCUCUGUGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 154942 | 0.7 | 0.583567 |
Target: 5'- gACACGCGCCUCUaccGCG-AG-CGCCUg -3' miRNA: 3'- -UGUGCGCGGAGAgc-CGCcUCuGUGGA- -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 139793 | 0.7 | 0.593149 |
Target: 5'- -gGCGuCGCC-CUCGGCGGuGGCgaaGCCg -3' miRNA: 3'- ugUGC-GCGGaGAGCCGCCuCUG---UGGa -5' |
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14118 | 5' | -60.4 | NC_003521.1 | + | 40806 | 0.7 | 0.612384 |
Target: 5'- gGCGCGgucagcuauuCGCCUCggGGCGGGGcccGCGCCa -3' miRNA: 3'- -UGUGC----------GCGGAGagCCGCCUC---UGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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