miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14118 5' -60.4 NC_003521.1 + 31822 0.69 0.660587
Target:  5'- ---aGCGCCgUCUCGGCccGGGCGCCg -3'
miRNA:   3'- ugugCGCGG-AGAGCCGccUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 139793 0.7 0.593149
Target:  5'- -gGCGuCGCC-CUCGGCGGuGGCgaaGCCg -3'
miRNA:   3'- ugUGC-GCGGaGAGCCGCCuCUG---UGGa -5'
14118 5' -60.4 NC_003521.1 + 40806 0.7 0.612384
Target:  5'- gGCGCGgucagcuauuCGCCUCggGGCGGGGcccGCGCCa -3'
miRNA:   3'- -UGUGC----------GCGGAGagCCGCCUC---UGUGGa -5'
14118 5' -60.4 NC_003521.1 + 226344 0.7 0.622988
Target:  5'- uGCGCGCGCCccgcggguagcgccgCgggagCGGCGGcuGACGCCg -3'
miRNA:   3'- -UGUGCGCGGa--------------Ga----GCCGCCu-CUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 138822 0.7 0.631671
Target:  5'- -gGCGCGCCUgaUGGCGGcGGCuacgGCCUg -3'
miRNA:   3'- ugUGCGCGGAgaGCCGCCuCUG----UGGA- -5'
14118 5' -60.4 NC_003521.1 + 148770 0.7 0.631671
Target:  5'- -uGgGUGCC-CUCGGCGGucGCGCCg -3'
miRNA:   3'- ugUgCGCGGaGAGCCGCCucUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 150658 0.7 0.631671
Target:  5'- gACGaagGCGgCUCUcCGGCGGcGGCGCCg -3'
miRNA:   3'- -UGUg--CGCgGAGA-GCCGCCuCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 104938 0.69 0.650959
Target:  5'- aGCGCGaCGCCgucgguuaCUCGaaggucgugccGCGGGGGCGCCg -3'
miRNA:   3'- -UGUGC-GCGGa-------GAGC-----------CGCCUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 72391 0.69 0.658663
Target:  5'- ---gGCGuCCUCgucgaucaccagCGGCGGAGGCACUg -3'
miRNA:   3'- ugugCGC-GGAGa-----------GCCGCCUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 154942 0.7 0.583567
Target:  5'- gACACGCGCCUCUaccGCG-AG-CGCCUg -3'
miRNA:   3'- -UGUGCGCGGAGAgc-CGCcUCuGUGGA- -5'
14118 5' -60.4 NC_003521.1 + 140846 0.71 0.571157
Target:  5'- -gACGUGCUggagcgcuucgcggUCUCGGCcGAGGCGCCg -3'
miRNA:   3'- ugUGCGCGG--------------AGAGCCGcCUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 165878 0.72 0.508467
Target:  5'- uGCACGUG-CUCgggCGGCGGGuACACCa -3'
miRNA:   3'- -UGUGCGCgGAGa--GCCGCCUcUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 219647 0.75 0.32891
Target:  5'- -aACGCGU--CUCGGCGGAGugACCa -3'
miRNA:   3'- ugUGCGCGgaGAGCCGCCUCugUGGa -5'
14118 5' -60.4 NC_003521.1 + 145853 0.74 0.388576
Target:  5'- -aACGCGUCUCUgggcccggCGGCGGGcGGCGCCg -3'
miRNA:   3'- ugUGCGCGGAGA--------GCCGCCU-CUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 195308 0.73 0.420958
Target:  5'- cCACGCccaguCCUCUCGGCGGAG-CGCa- -3'
miRNA:   3'- uGUGCGc----GGAGAGCCGCCUCuGUGga -5'
14118 5' -60.4 NC_003521.1 + 201003 0.73 0.420958
Target:  5'- aGCAgGCGCCa-UCGGCGGAGGacCGCCc -3'
miRNA:   3'- -UGUgCGCGGagAGCCGCCUCU--GUGGa -5'
14118 5' -60.4 NC_003521.1 + 153639 0.73 0.437748
Target:  5'- aGCGgGUGCgUCUCGGUGGAG-CGCUg -3'
miRNA:   3'- -UGUgCGCGgAGAGCCGCCUCuGUGGa -5'
14118 5' -60.4 NC_003521.1 + 61262 0.73 0.454915
Target:  5'- cACACGCGCCUCUguuacugcuUGGCGcuGAGccgcgcGCACCUg -3'
miRNA:   3'- -UGUGCGCGGAGA---------GCCGC--CUC------UGUGGA- -5'
14118 5' -60.4 NC_003521.1 + 140729 0.73 0.454915
Target:  5'- cCGCGCGaguCCUCgUCGGCGGucgAGGCGCCc -3'
miRNA:   3'- uGUGCGC---GGAG-AGCCGCC---UCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 112467 0.73 0.463634
Target:  5'- -gGCGCGCC---CGGCGGGGcCACCUa -3'
miRNA:   3'- ugUGCGCGGagaGCCGCCUCuGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.