miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14118 5' -60.4 NC_003521.1 + 776 0.73 0.420958
Target:  5'- aGCAgGCGCCa-UCGGCGGAGGacCGCCc -3'
miRNA:   3'- -UGUgCGCGGagAGCCGCCUCU--GUGGa -5'
14118 5' -60.4 NC_003521.1 + 1979 0.68 0.73626
Target:  5'- -gGCGCGCCUCUaauaacgauaCGGCGaacacccaGGGACACg- -3'
miRNA:   3'- ugUGCGCGGAGA----------GCCGC--------CUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 5074 0.67 0.77241
Target:  5'- cACACGCGCCaCUCGugaugaCGGGGggaaaACACCg -3'
miRNA:   3'- -UGUGCGCGGaGAGCc-----GCCUC-----UGUGGa -5'
14118 5' -60.4 NC_003521.1 + 18729 0.68 0.736259
Target:  5'- cGCugGCGgCggcgaUCguggCGGCGGuGGCGCCg -3'
miRNA:   3'- -UGugCGCgG-----AGa---GCCGCCuCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 31822 0.69 0.660587
Target:  5'- ---aGCGCCgUCUCGGCccGGGCGCCg -3'
miRNA:   3'- ugugCGCGG-AGAGCCGccUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 36403 0.66 0.80678
Target:  5'- uACAacaGCGCCUCgagCGuGaCGGAGAagGCCUc -3'
miRNA:   3'- -UGUg--CGCGGAGa--GC-C-GCCUCUg-UGGA- -5'
14118 5' -60.4 NC_003521.1 + 36584 0.67 0.798381
Target:  5'- uGCGCGaacugGCCUggCGGCGG-GugGCCg -3'
miRNA:   3'- -UGUGCg----CGGAgaGCCGCCuCugUGGa -5'
14118 5' -60.4 NC_003521.1 + 37316 0.67 0.789848
Target:  5'- uGCACGUcuCCUCUgGGUGGGGGCGg-- -3'
miRNA:   3'- -UGUGCGc-GGAGAgCCGCCUCUGUgga -5'
14118 5' -60.4 NC_003521.1 + 37626 0.66 0.823151
Target:  5'- cCugGUgGCCUC-CGGCGGuGaACAUCUg -3'
miRNA:   3'- uGugCG-CGGAGaGCCGCCuC-UGUGGA- -5'
14118 5' -60.4 NC_003521.1 + 38225 0.66 0.81504
Target:  5'- gGCGCaggGCgGCCUCggcgggcggGGCGGAGACGCg- -3'
miRNA:   3'- -UGUG---CG-CGGAGag-------CCGCCUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 39540 0.68 0.745437
Target:  5'- aGCugGCGCaggUCGGUGGccccGACGCCg -3'
miRNA:   3'- -UGugCGCGgagAGCCGCCu---CUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 40806 0.7 0.612384
Target:  5'- gGCGCGgucagcuauuCGCCUCggGGCGGGGcccGCGCCa -3'
miRNA:   3'- -UGUGC----------GCGGAGagCCGCCUC---UGUGGa -5'
14118 5' -60.4 NC_003521.1 + 48761 0.66 0.837359
Target:  5'- gACcCGCGUUUCUCGGCcacgcgauaaaAGACACCg -3'
miRNA:   3'- -UGuGCGCGGAGAGCCGcc---------UCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 50487 0.69 0.670194
Target:  5'- gGCGCGUGCCacagcgugUCggcggCGGUGGAGAUgguACCa -3'
miRNA:   3'- -UGUGCGCGG--------AGa----GCCGCCUCUG---UGGa -5'
14118 5' -60.4 NC_003521.1 + 53350 0.66 0.823151
Target:  5'- cACGCcgGCGCgg--CGGCGGAGGgGCCg -3'
miRNA:   3'- -UGUG--CGCGgagaGCCGCCUCUgUGGa -5'
14118 5' -60.4 NC_003521.1 + 55019 0.66 0.83032
Target:  5'- gGCGCaGCGCCagCgUCGGCGGcuccgagAGACGCg- -3'
miRNA:   3'- -UGUG-CGCGGa-G-AGCCGCC-------UCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 55731 0.67 0.79838
Target:  5'- cGCGCaGCGCCUCccagCGcGCGGGcGGCAgCg -3'
miRNA:   3'- -UGUG-CGCGGAGa---GC-CGCCU-CUGUgGa -5'
14118 5' -60.4 NC_003521.1 + 61262 0.73 0.454915
Target:  5'- cACACGCGCCUCUguuacugcuUGGCGcuGAGccgcgcGCACCUg -3'
miRNA:   3'- -UGUGCGCGGAGA---------GCCGC--CUC------UGUGGA- -5'
14118 5' -60.4 NC_003521.1 + 62365 0.66 0.837359
Target:  5'- uGCACGCGCuCUCgcgccccuucaaCGGaaccaCGGAGACGCa- -3'
miRNA:   3'- -UGUGCGCG-GAGa-----------GCC-----GCCUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 71256 0.67 0.781187
Target:  5'- cCACGauccCGCCaacaUCGGCGGAGGCggggGCCg -3'
miRNA:   3'- uGUGC----GCGGag--AGCCGCCUCUG----UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.