miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 3' -55.8 NC_003521.1 + 224614 0.66 0.954754
Target:  5'- gGCGGCaGGGCGCCgCCACCUcgaagggccagCACUcgGACa -3'
miRNA:   3'- -UGUCG-CUUGUGG-GGUGGAa----------GUGG--CUG- -5'
14120 3' -55.8 NC_003521.1 + 55954 0.66 0.958446
Target:  5'- aGCAccGUGuGCAgCCCCACCa-CGCCGAUg -3'
miRNA:   3'- -UGU--CGCuUGU-GGGGUGGaaGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 130137 0.66 0.958446
Target:  5'- gGCGGCGc-CGCCgCUGCCgcCACCGAg -3'
miRNA:   3'- -UGUCGCuuGUGG-GGUGGaaGUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 165758 0.66 0.954754
Target:  5'- gGCGGCGGcUugCCCAUCaUCguGCCGAa -3'
miRNA:   3'- -UGUCGCUuGugGGGUGGaAG--UGGCUg -5'
14120 3' -55.8 NC_003521.1 + 31737 0.66 0.950847
Target:  5'- cGCGGCcacCGCCuCCGCCgccUCgACCGGCa -3'
miRNA:   3'- -UGUCGcuuGUGG-GGUGGa--AG-UGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 113684 0.66 0.950847
Target:  5'- uACGGCGAuCugCgCCGCCUggaggUGCaCGACg -3'
miRNA:   3'- -UGUCGCUuGugG-GGUGGAa----GUG-GCUG- -5'
14120 3' -55.8 NC_003521.1 + 75613 0.66 0.954754
Target:  5'- -gGGCG-GCGCCaCgGCUcagUCGCCGACg -3'
miRNA:   3'- ugUCGCuUGUGG-GgUGGa--AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 203286 0.66 0.954754
Target:  5'- cGCcGCGAcccccGCugCCCACCcccaggacgUCGCUGAUg -3'
miRNA:   3'- -UGuCGCU-----UGugGGGUGGa--------AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 196742 0.66 0.950847
Target:  5'- gGCGGCG-GCGCCUgCACCgUCugcugccccgGCCGGCg -3'
miRNA:   3'- -UGUCGCuUGUGGG-GUGGaAG----------UGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 217280 0.66 0.950847
Target:  5'- -gAGCaGGCGCUggCCACCacCACCGACa -3'
miRNA:   3'- ugUCGcUUGUGG--GGUGGaaGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 79314 0.66 0.958446
Target:  5'- -aAGCGAAUggGCCCCACC---ACgCGACc -3'
miRNA:   3'- ugUCGCUUG--UGGGGUGGaagUG-GCUG- -5'
14120 3' -55.8 NC_003521.1 + 190017 0.66 0.958446
Target:  5'- cACcGgGGACACCgCUGCCaUCACCGuCg -3'
miRNA:   3'- -UGuCgCUUGUGG-GGUGGaAGUGGCuG- -5'
14120 3' -55.8 NC_003521.1 + 118211 0.66 0.954754
Target:  5'- -gAGCGcGCgGCCgCCGCCgUCGCCGGg -3'
miRNA:   3'- ugUCGCuUG-UGG-GGUGGaAGUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 117239 0.66 0.958446
Target:  5'- cGCGGCGGcucccgGCGCCgCCGCCaUC-CCGcCa -3'
miRNA:   3'- -UGUCGCU------UGUGG-GGUGGaAGuGGCuG- -5'
14120 3' -55.8 NC_003521.1 + 73146 0.66 0.954754
Target:  5'- gGCAGCGGcgGCGgCgCCGCCUcggcCugCGACc -3'
miRNA:   3'- -UGUCGCU--UGUgG-GGUGGAa---GugGCUG- -5'
14120 3' -55.8 NC_003521.1 + 212235 0.66 0.958086
Target:  5'- gGCGGUGcgcAGCAgCCCGCCgUCcgcguagucggugGCCGGCg -3'
miRNA:   3'- -UGUCGC---UUGUgGGGUGGaAG-------------UGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 142976 0.66 0.950847
Target:  5'- -uGGCccGCACCCCucUCUgucgCACCGGCg -3'
miRNA:   3'- ugUCGcuUGUGGGGu-GGAa---GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 137173 0.66 0.958086
Target:  5'- cGCAGCGGccgccgccgagcuGC-CCCCGCUggagUCGgCGGCc -3'
miRNA:   3'- -UGUCGCU-------------UGuGGGGUGGa---AGUgGCUG- -5'
14120 3' -55.8 NC_003521.1 + 132788 0.66 0.950847
Target:  5'- --cGCGucauccCGCCgCCGCCUgaCGCCGACg -3'
miRNA:   3'- uguCGCuu----GUGG-GGUGGAa-GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 167187 0.66 0.965198
Target:  5'- cGCGGCGGAgGCCUUcuGCUUggGCUGGCa -3'
miRNA:   3'- -UGUCGCUUgUGGGG--UGGAagUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.