miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 3' -55.8 NC_003521.1 + 1260 0.67 0.931515
Target:  5'- uGCAGCGcAACACgcugacccuagccgCCCGCga-CGCCGACg -3'
miRNA:   3'- -UGUCGC-UUGUG--------------GGGUGgaaGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 1464 0.66 0.961926
Target:  5'- gGCAGCacacGGGCAUCCCGCUgcagaCGCCcgGACg -3'
miRNA:   3'- -UGUCG----CUUGUGGGGUGGaa---GUGG--CUG- -5'
14120 3' -55.8 NC_003521.1 + 2017 0.67 0.932999
Target:  5'- cACGGCGucGCGCCCCACaacUCGuCCGcuGCu -3'
miRNA:   3'- -UGUCGCu-UGUGGGGUGga-AGU-GGC--UG- -5'
14120 3' -55.8 NC_003521.1 + 2356 0.67 0.942371
Target:  5'- gGCcGCGucucCGCCCCGCC--CGCCGAg -3'
miRNA:   3'- -UGuCGCuu--GUGGGGUGGaaGUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 2721 0.69 0.858022
Target:  5'- uGCGG-GAGCGCCgUCACCgccUCGCUGGCu -3'
miRNA:   3'- -UGUCgCUUGUGG-GGUGGa--AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 2827 0.66 0.961926
Target:  5'- -uGGCGAccCAgCCgACCgaUCGCCGACg -3'
miRNA:   3'- ugUCGCUu-GUgGGgUGGa-AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 2959 0.67 0.942371
Target:  5'- gACAuaGAGCGCCcucucccgguaCCACCgaaaggCGCCGACc -3'
miRNA:   3'- -UGUcgCUUGUGG-----------GGUGGaa----GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 3848 0.66 0.958446
Target:  5'- aGCucuGCcGACGCCgUACCUgUUGCCGACg -3'
miRNA:   3'- -UGu--CGcUUGUGGgGUGGA-AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 5179 0.68 0.91724
Target:  5'- gGCGGCGAggguGCACCCCuCCca-ACUGAa -3'
miRNA:   3'- -UGUCGCU----UGUGGGGuGGaagUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 5319 0.68 0.905602
Target:  5'- gGCGGCGu--GCCCCGCCggccgCGacuCCGGCg -3'
miRNA:   3'- -UGUCGCuugUGGGGUGGaa---GU---GGCUG- -5'
14120 3' -55.8 NC_003521.1 + 7003 0.69 0.872661
Target:  5'- gGCGGUGGAUACCgUACUUggGCUGGCg -3'
miRNA:   3'- -UGUCGCUUGUGGgGUGGAagUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 7210 0.66 0.96456
Target:  5'- uGCccuCGAGCACCCCGCCggagaucauggCGCCGu- -3'
miRNA:   3'- -UGuc-GCUUGUGGGGUGGaa---------GUGGCug -5'
14120 3' -55.8 NC_003521.1 + 12776 0.67 0.932999
Target:  5'- cGCAcCGAAcCGCUCCGCUUaacgcCACCGACa -3'
miRNA:   3'- -UGUcGCUU-GUGGGGUGGAa----GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 15556 0.75 0.569167
Target:  5'- -gAGgGGGCG-CCCACCUUCACgCGACa -3'
miRNA:   3'- ugUCgCUUGUgGGGUGGAAGUG-GCUG- -5'
14120 3' -55.8 NC_003521.1 + 16216 0.66 0.954754
Target:  5'- -uGGCG-GCGCCCUGCCgccUgGCCGAg -3'
miRNA:   3'- ugUCGCuUGUGGGGUGGa--AgUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 18885 0.67 0.944137
Target:  5'- aGCAGCGAcgaggacgaggcgccGCggcaGCCCCgaaggguggcGCCgcgCGCCGGCa -3'
miRNA:   3'- -UGUCGCU---------------UG----UGGGG----------UGGaa-GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 18998 0.68 0.893073
Target:  5'- --cGCGAcgagggagACACgCCCGCCc-CGCCGACg -3'
miRNA:   3'- uguCGCU--------UGUG-GGGUGGaaGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 20696 0.69 0.865441
Target:  5'- gACAGCGAAcCGCCCgccaACCUggCGCgUGACg -3'
miRNA:   3'- -UGUCGCUU-GUGGGg---UGGAa-GUG-GCUG- -5'
14120 3' -55.8 NC_003521.1 + 22717 0.79 0.378975
Target:  5'- uACAGCGGgcucuACGCCCuCAUCgUCACCGGCg -3'
miRNA:   3'- -UGUCGCU-----UGUGGG-GUGGaAGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 23215 0.67 0.932999
Target:  5'- gGCGGCcgaGACGCCCCugCUgguCCGGg -3'
miRNA:   3'- -UGUCGc--UUGUGGGGugGAaguGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.