miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 3' -55.8 NC_003521.1 + 119715 1.08 0.005558
Target:  5'- uACAGCGAACACCCCACCUUCACCGACc -3'
miRNA:   3'- -UGUCGCUUGUGGGGUGGAAGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 42963 0.81 0.29777
Target:  5'- cCAGCGAGCGCgaCCCGCCggcgccCACCGACg -3'
miRNA:   3'- uGUCGCUUGUG--GGGUGGaa----GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 22717 0.79 0.378975
Target:  5'- uACAGCGGgcucuACGCCCuCAUCgUCACCGGCg -3'
miRNA:   3'- -UGUCGCU-----UGUGGG-GUGGaAGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 149992 0.79 0.382194
Target:  5'- gGCGGCGcGCACCcgccgcacgacgacgCCACCUUCACCGuGCa -3'
miRNA:   3'- -UGUCGCuUGUGG---------------GGUGGAAGUGGC-UG- -5'
14120 3' -55.8 NC_003521.1 + 112988 0.78 0.391959
Target:  5'- aGCGGCGGGCGCCacuaccacccgggCACCUUCgACCGGCa -3'
miRNA:   3'- -UGUCGCUUGUGGg------------GUGGAAG-UGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 117328 0.77 0.446684
Target:  5'- aGCGGCGAcgacgACACCCCGCCggCgACgGACa -3'
miRNA:   3'- -UGUCGCU-----UGUGGGGUGGaaG-UGgCUG- -5'
14120 3' -55.8 NC_003521.1 + 27212 0.76 0.49226
Target:  5'- cGCGGCGAccgcCACCCCaacaGCCUggucaUCGCCGGCu -3'
miRNA:   3'- -UGUCGCUu---GUGGGG----UGGA-----AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 163571 0.76 0.520612
Target:  5'- gGCGGCGAGUACCCCguggACCc-CGCCGACg -3'
miRNA:   3'- -UGUCGCUUGUGGGG----UGGaaGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 139917 0.75 0.559349
Target:  5'- --cGCGAGCGgagCCCACCcUCGCCGACu -3'
miRNA:   3'- uguCGCUUGUg--GGGUGGaAGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 15556 0.75 0.569167
Target:  5'- -gAGgGGGCG-CCCACCUUCACgCGACa -3'
miRNA:   3'- ugUCgCUUGUgGGGUGGAAGUG-GCUG- -5'
14120 3' -55.8 NC_003521.1 + 27296 0.75 0.569167
Target:  5'- uGCucCGAGCugCCCGCCauccUCACCGACu -3'
miRNA:   3'- -UGucGCUUGugGGGUGGa---AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 118155 0.74 0.595868
Target:  5'- cCGGCGAcgcCACCCCACCgccgcagacgacgccCGCCGGCa -3'
miRNA:   3'- uGUCGCUu--GUGGGGUGGaa-------------GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 155348 0.74 0.597855
Target:  5'- gGC-GCGGGCACCggcaccacgacgaCCACCUuucUCGCCGGCg -3'
miRNA:   3'- -UGuCGCUUGUGG-------------GGUGGA---AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 207505 0.73 0.648689
Target:  5'- -uGGaGAGCACCUgguucaagcaCACCUUCGCCGGCa -3'
miRNA:   3'- ugUCgCUUGUGGG----------GUGGAAGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 191891 0.73 0.648689
Target:  5'- gGCGGCGG-CGCCaCguCCUUCACgGACa -3'
miRNA:   3'- -UGUCGCUuGUGG-GguGGAAGUGgCUG- -5'
14120 3' -55.8 NC_003521.1 + 143704 0.73 0.648689
Target:  5'- gACAGCu-ACGCCgCGCCUUCugcacgcugGCCGACg -3'
miRNA:   3'- -UGUCGcuUGUGGgGUGGAAG---------UGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 93928 0.73 0.65865
Target:  5'- aGCGGCGAcuaccGCugCCCGCCgUCGuCUGGCu -3'
miRNA:   3'- -UGUCGCU-----UGugGGGUGGaAGU-GGCUG- -5'
14120 3' -55.8 NC_003521.1 + 140571 0.73 0.66561
Target:  5'- gGCGGCGAcagcucgucgucggGCACCUCGCCcagcuccaccUCGCCGGCc -3'
miRNA:   3'- -UGUCGCU--------------UGUGGGGUGGa---------AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 111605 0.73 0.66859
Target:  5'- aGCGGCGccgGACugCCCACCacgCGCCaGACc -3'
miRNA:   3'- -UGUCGC---UUGugGGGUGGaa-GUGG-CUG- -5'
14120 3' -55.8 NC_003521.1 + 223958 0.73 0.66859
Target:  5'- cGCGGgGAACGCacgucguagacgUCCGCCUgCGCCGGCg -3'
miRNA:   3'- -UGUCgCUUGUG------------GGGUGGAaGUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.