miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 3' -55.8 NC_003521.1 + 186663 0.71 0.755796
Target:  5'- cACAGgGGcccccaGCACUCCucguccucuCCUUCGCCGGCa -3'
miRNA:   3'- -UGUCgCU------UGUGGGGu--------GGAAGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 138883 0.72 0.707988
Target:  5'- cACGGCGGccacguGgACCCCACCggcgaguaCGCCGGCu -3'
miRNA:   3'- -UGUCGCU------UgUGGGGUGGaa------GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 165890 0.72 0.717706
Target:  5'- gGCGGCGGGuacacCACCCCGCgCUgccggGCCGACu -3'
miRNA:   3'- -UGUCGCUU-----GUGGGGUG-GAag---UGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 172445 0.72 0.717706
Target:  5'- cACGGCGucCACCUCGCuCUUCACCu-- -3'
miRNA:   3'- -UGUCGCuuGUGGGGUG-GAAGUGGcug -5'
14120 3' -55.8 NC_003521.1 + 150472 0.72 0.717706
Target:  5'- gGCGGCGAGCGCCUgGuggggcCCUUCagcuuuuacggcGCCGGCg -3'
miRNA:   3'- -UGUCGCUUGUGGGgU------GGAAG------------UGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 224084 0.72 0.727354
Target:  5'- cCGGCGGGCGCgCgCGCCggcggUCGCCGAa -3'
miRNA:   3'- uGUCGCUUGUGgG-GUGGa----AGUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 152772 0.72 0.745463
Target:  5'- aACGGCGucgccuccuGCGCCuugcgcaCCGCCUcggUCACCGGCa -3'
miRNA:   3'- -UGUCGCu--------UGUGG-------GGUGGA---AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 61888 0.72 0.746407
Target:  5'- gAUAGCGAGCAgaUgCCGCCgUUCcCCGACg -3'
miRNA:   3'- -UGUCGCUUGU--GgGGUGG-AAGuGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 206984 0.71 0.754861
Target:  5'- -aAGCGAaugACGCCCCAggcggguCCUUCGCaGACg -3'
miRNA:   3'- ugUCGCU---UGUGGGGU-------GGAAGUGgCUG- -5'
14120 3' -55.8 NC_003521.1 + 72718 0.72 0.707988
Target:  5'- uCGGCGAuccACGCCuCCucggUCUUCGCCGACc -3'
miRNA:   3'- uGUCGCU---UGUGG-GGu---GGAAGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 118292 0.72 0.707988
Target:  5'- aGCAGC-AGCACUaCCACCgcCGCCGGCc -3'
miRNA:   3'- -UGUCGcUUGUGG-GGUGGaaGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 226132 0.73 0.688378
Target:  5'- gGC-GCGGAUGCCCCACCacCAgCGGCg -3'
miRNA:   3'- -UGuCGCUUGUGGGGUGGaaGUgGCUG- -5'
14120 3' -55.8 NC_003521.1 + 149992 0.79 0.382194
Target:  5'- gGCGGCGcGCACCcgccgcacgacgacgCCACCUUCACCGuGCa -3'
miRNA:   3'- -UGUCGCuUGUGG---------------GGUGGAAGUGGC-UG- -5'
14120 3' -55.8 NC_003521.1 + 112988 0.78 0.391959
Target:  5'- aGCGGCGGGCGCCacuaccacccgggCACCUUCgACCGGCa -3'
miRNA:   3'- -UGUCGCUUGUGGg------------GUGGAAG-UGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 118155 0.74 0.595868
Target:  5'- cCGGCGAcgcCACCCCACCgccgcagacgacgccCGCCGGCa -3'
miRNA:   3'- uGUCGCUu--GUGGGGUGGaa-------------GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 143704 0.73 0.648689
Target:  5'- gACAGCu-ACGCCgCGCCUUCugcacgcugGCCGACg -3'
miRNA:   3'- -UGUCGcuUGUGGgGUGGAAG---------UGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 191891 0.73 0.648689
Target:  5'- gGCGGCGG-CGCCaCguCCUUCACgGACa -3'
miRNA:   3'- -UGUCGCUuGUGG-GguGGAAGUGgCUG- -5'
14120 3' -55.8 NC_003521.1 + 129561 0.73 0.678502
Target:  5'- cACGGCGGGCccgacgauggcuGCUCCGCCgcgccgCGCCGGCc -3'
miRNA:   3'- -UGUCGCUUG------------UGGGGUGGaa----GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 143827 0.73 0.678502
Target:  5'- cCAGCGAgaucguGCGCgCCGCCcUCugCGACu -3'
miRNA:   3'- uGUCGCU------UGUGgGGUGGaAGugGCUG- -5'
14120 3' -55.8 NC_003521.1 + 204045 0.73 0.688378
Target:  5'- cGCAGCGcGugGCCCUGCCagUCGCCG-Ca -3'
miRNA:   3'- -UGUCGC-UugUGGGGUGGa-AGUGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.