miRNA display CGI


Results 21 - 40 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 112364 0.76 0.219758
Target:  5'- cGCACGcgGCGGCUGCGGCgucUCGUCCa -3'
miRNA:   3'- uCGUGCa-CGCCGAUGCCGgc-GGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 132178 0.76 0.224781
Target:  5'- aAGCacACGUGCGcGCUGauCGGCaGCCGCCUg -3'
miRNA:   3'- -UCG--UGCACGC-CGAU--GCCGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 217333 0.76 0.224781
Target:  5'- cAGCACG-GUGGCggACGGCgGCCgGUCCu -3'
miRNA:   3'- -UCGUGCaCGCCGa-UGCCGgCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 18706 0.76 0.224781
Target:  5'- cGGCGCGaucCGGCUGUGGCUGCCGCUg -3'
miRNA:   3'- -UCGUGCac-GCCGAUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 104158 0.75 0.229901
Target:  5'- cGGCGCcuGUGUGGCUucuuGCucugucGCCGCCGCCCc -3'
miRNA:   3'- -UCGUG--CACGCCGA----UGc-----CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 93913 0.75 0.229901
Target:  5'- uGGCugGUcGCGGCaaGCGGCgacuacCGCUGCCCg -3'
miRNA:   3'- -UCGugCA-CGCCGa-UGCCG------GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 194555 0.75 0.234594
Target:  5'- cGCGuCGgGCGccucgucgaaauaGCUugGGCCGCUGCCCa -3'
miRNA:   3'- uCGU-GCaCGC-------------CGAugCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 117631 0.75 0.23512
Target:  5'- cGGCGCcguaUGCGGcCUACGGucccCCGCCGCCg -3'
miRNA:   3'- -UCGUGc---ACGCC-GAUGCC----GGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 74351 0.75 0.23512
Target:  5'- uGGCGCugcugcGCGGCUACGGCCagugcggcgacgGCuCGCCCu -3'
miRNA:   3'- -UCGUGca----CGCCGAUGCCGG------------CG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 155147 0.75 0.240438
Target:  5'- cGGCGCGUGCuggacgccGGCUcggaacagcugGCGGCCGCgGCUg -3'
miRNA:   3'- -UCGUGCACG--------CCGA-----------UGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 196098 0.75 0.245309
Target:  5'- cAGCACGaaaUGCGGCgcGCGGuauagauCCGCCgGCCCg -3'
miRNA:   3'- -UCGUGC---ACGCCGa-UGCC-------GGCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 204893 0.75 0.245856
Target:  5'- uGGC-CGcGCGGCgggACGGUgGCCGCCg -3'
miRNA:   3'- -UCGuGCaCGCCGa--UGCCGgCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 90807 0.75 0.250263
Target:  5'- cGCACGUGCacgugaagguGGCgucgucgUGCGGCgggugcgCGCCGCCCg -3'
miRNA:   3'- uCGUGCACG----------CCG-------AUGCCG-------GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 103261 0.75 0.251374
Target:  5'- cGCGCGUGCacuGCUGCucGGCCGgCGCCg -3'
miRNA:   3'- uCGUGCACGc--CGAUG--CCGGCgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 134512 0.75 0.251374
Target:  5'- aGGCagGCGaUGC-GC-ACGGCCGCCGCCUg -3'
miRNA:   3'- -UCG--UGC-ACGcCGaUGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 114248 0.75 0.256995
Target:  5'- cGGCACGacgGCGGCUuc--CCGCUGCCCa -3'
miRNA:   3'- -UCGUGCa--CGCCGAugccGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 58041 0.75 0.256995
Target:  5'- cGCGCGUGuuGCUGCuGGCgGCCaCCCg -3'
miRNA:   3'- uCGUGCACgcCGAUG-CCGgCGGcGGG- -5'
14136 3' -63.3 NC_003521.1 + 76360 0.75 0.262717
Target:  5'- cGGCgGCGgcaGCGGCgaccgugACGGCCGCgGCCg -3'
miRNA:   3'- -UCG-UGCa--CGCCGa------UGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 31713 0.75 0.262717
Target:  5'- cAGCAUGUGCGcguGCUgggacgccGCGGCCaCCGCCUc -3'
miRNA:   3'- -UCGUGCACGC---CGA--------UGCCGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 142351 0.74 0.274473
Target:  5'- cGcCACG-GCcGCcGCGGCCGCCGCCg -3'
miRNA:   3'- uC-GUGCaCGcCGaUGCCGGCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.