miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 5' -58.5 NC_003521.1 + 34246 0.66 0.897004
Target:  5'- -aGcCGGGGCCUGUcguGCCccGUCGCCCUa -3'
miRNA:   3'- gaC-GUCUUGGACG---UGGccCAGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 234350 0.66 0.897004
Target:  5'- gCUGCcGGACCUGCcucCCGugccGUCAUCCg -3'
miRNA:   3'- -GACGuCUUGGACGu--GGCc---CAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 1483 0.66 0.890641
Target:  5'- gCUGCAGAcGCCcggacgacUGCGCCaacccuGGGUgAUCCUg -3'
miRNA:   3'- -GACGUCU-UGG--------ACGUGG------CCCAgUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 166171 0.66 0.890641
Target:  5'- -cGCAGGGCCgagcgGCGCUccaGGGUCccgcgcaccACCCc -3'
miRNA:   3'- gaCGUCUUGGa----CGUGG---CCCAG---------UGGGa -5'
14148 5' -58.5 NC_003521.1 + 141294 0.66 0.890641
Target:  5'- gCUGCGGcacggucuccGACCUGaucCUGGG-CGCCCUc -3'
miRNA:   3'- -GACGUC----------UUGGACgu-GGCCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 204127 0.66 0.890641
Target:  5'- cCUGCucGGGCCagGCGCCGGa--GCCCg -3'
miRNA:   3'- -GACGu-CUUGGa-CGUGGCCcagUGGGa -5'
14148 5' -58.5 NC_003521.1 + 201710 0.66 0.890641
Target:  5'- gCUGCAGAcGCCcggacgacUGCGCCaacccuGGGUgAUCCUg -3'
miRNA:   3'- -GACGUCU-UGG--------ACGUGG------CCCAgUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 76531 0.66 0.890641
Target:  5'- --cCAGGGCCUGCGCCGuca-GCCCg -3'
miRNA:   3'- gacGUCUUGGACGUGGCccagUGGGa -5'
14148 5' -58.5 NC_003521.1 + 141124 0.66 0.888038
Target:  5'- cCUGCAGAagcggccgcccgagACCuucggcaaccccgUGCACCGGGcCAUggCCUa -3'
miRNA:   3'- -GACGUCU--------------UGG-------------ACGUGGCCCaGUG--GGA- -5'
14148 5' -58.5 NC_003521.1 + 178794 0.66 0.88407
Target:  5'- uUGCAGGACggGCccCCGGG-CACCUc -3'
miRNA:   3'- gACGUCUUGgaCGu-GGCCCaGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 102835 0.66 0.88407
Target:  5'- gCUGCgAGAAgC-GCGCCaGGG-CGCCCg -3'
miRNA:   3'- -GACG-UCUUgGaCGUGG-CCCaGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 114674 0.66 0.88407
Target:  5'- gUGCAGGACCUGUucGCCGucUUcCCCa -3'
miRNA:   3'- gACGUCUUGGACG--UGGCccAGuGGGa -5'
14148 5' -58.5 NC_003521.1 + 120963 0.66 0.88407
Target:  5'- aCUGCGG-ACCgagGC-CCGGGUggaUAUCCg -3'
miRNA:   3'- -GACGUCuUGGa--CGuGGCCCA---GUGGGa -5'
14148 5' -58.5 NC_003521.1 + 166623 0.66 0.88407
Target:  5'- -gGCAGAagacggcgucggGCCgcGCGCCGGG-CGCCg- -3'
miRNA:   3'- gaCGUCU------------UGGa-CGUGGCCCaGUGGga -5'
14148 5' -58.5 NC_003521.1 + 177545 0.66 0.877291
Target:  5'- -aGCAGcugCUGCACCcGGUCGCCg- -3'
miRNA:   3'- gaCGUCuugGACGUGGcCCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 54001 0.66 0.877291
Target:  5'- -cGCAGGACC-GUcagAUCuGGUCGCCCa -3'
miRNA:   3'- gaCGUCUUGGaCG---UGGcCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 105397 0.66 0.877291
Target:  5'- -cGCGGGcGCCaaaucGCGCCGGGUgauugguuccCGCCCg -3'
miRNA:   3'- gaCGUCU-UGGa----CGUGGCCCA----------GUGGGa -5'
14148 5' -58.5 NC_003521.1 + 221344 0.66 0.870312
Target:  5'- -aGCGGGccACCUGCACCuGGcCGCgCa -3'
miRNA:   3'- gaCGUCU--UGGACGUGGcCCaGUGgGa -5'
14148 5' -58.5 NC_003521.1 + 77599 0.66 0.870312
Target:  5'- -gGCcGAACCcacGuCACCGGGcgCGCCCg -3'
miRNA:   3'- gaCGuCUUGGa--C-GUGGCCCa-GUGGGa -5'
14148 5' -58.5 NC_003521.1 + 48993 0.66 0.870312
Target:  5'- gCUGaGGAACgUGCugCGGGaCGCCg- -3'
miRNA:   3'- -GACgUCUUGgACGugGCCCaGUGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.