miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 3' -59.9 NC_003521.1 + 80007 0.66 0.836806
Target:  5'- ---gGGCUUG--GGCGGCUUCuGCUGCg -3'
miRNA:   3'- uucaCCGAGCugCCGCCGAAG-CGGUG- -5'
14160 3' -59.9 NC_003521.1 + 198803 0.66 0.836806
Target:  5'- -cGUGGUgcCGGCGGCGuCUgucgUGCCGCc -3'
miRNA:   3'- uuCACCGa-GCUGCCGCcGAa---GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 139776 0.66 0.836806
Target:  5'- ---cGGC-CGuCGGCGGC--CGCCAUg -3'
miRNA:   3'- uucaCCGaGCuGCCGCCGaaGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 128054 0.66 0.828833
Target:  5'- gAAGUGGC-CGACGcGCcGCgcgaUGCCGCc -3'
miRNA:   3'- -UUCACCGaGCUGC-CGcCGaa--GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 14437 0.66 0.828833
Target:  5'- -cGUGGUgcacaCGgcccuGCGGCGGCgucagcCGCCGCu -3'
miRNA:   3'- uuCACCGa----GC-----UGCCGCCGaa----GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 41302 0.66 0.828833
Target:  5'- ----aGCUguACGGUgGGCUUCGCCACa -3'
miRNA:   3'- uucacCGAgcUGCCG-CCGAAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 31698 0.66 0.828833
Target:  5'- aAAGUGGggCGGCGGCagcaugugcgcGuGCUgggaCGCCGCg -3'
miRNA:   3'- -UUCACCgaGCUGCCG-----------C-CGAa---GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 84252 0.66 0.828833
Target:  5'- gGGGUGGaugCGAUGGCGGU--CGCUggGCa -3'
miRNA:   3'- -UUCACCga-GCUGCCGCCGaaGCGG--UG- -5'
14160 3' -59.9 NC_003521.1 + 182069 0.66 0.828026
Target:  5'- cAGUGGCUgGACcucagcccgcaguGGCuGCUgcacCGCCGCc -3'
miRNA:   3'- uUCACCGAgCUG-------------CCGcCGAa---GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 122528 0.66 0.820694
Target:  5'- ---aGGC-CGGCGGCGGUgguagUGCUGCu -3'
miRNA:   3'- uucaCCGaGCUGCCGCCGaa---GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 197294 0.66 0.820694
Target:  5'- gGAGggcGGCUCGACgggagagggGGCGGCaggCGCUgACg -3'
miRNA:   3'- -UUCa--CCGAGCUG---------CCGCCGaa-GCGG-UG- -5'
14160 3' -59.9 NC_003521.1 + 97262 0.66 0.820694
Target:  5'- -cGUGcccGCcagCGAUGGCGGCUgcugcUCGUCGCc -3'
miRNA:   3'- uuCAC---CGa--GCUGCCGCCGA-----AGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 165747 0.66 0.820694
Target:  5'- uGAG-GGagggCGGCGGCGGCUU-GCC-Ca -3'
miRNA:   3'- -UUCaCCga--GCUGCCGCCGAAgCGGuG- -5'
14160 3' -59.9 NC_003521.1 + 186616 0.66 0.820694
Target:  5'- cAAG-GGCUacgCGGCGGCGGUggUgGCgGCa -3'
miRNA:   3'- -UUCaCCGA---GCUGCCGCCGa-AgCGgUG- -5'
14160 3' -59.9 NC_003521.1 + 92908 0.66 0.812399
Target:  5'- -cGUGcGCUCGAuaCGGCaGCgacggCGCCAUu -3'
miRNA:   3'- uuCAC-CGAGCU--GCCGcCGaa---GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 236486 0.66 0.812399
Target:  5'- ----cGC-CGGCGGCGGUggCGCCAg -3'
miRNA:   3'- uucacCGaGCUGCCGCCGaaGCGGUg -5'
14160 3' -59.9 NC_003521.1 + 149158 0.66 0.811561
Target:  5'- -cGUGGCcaccucgUCGuccgucuCGGCGcGCgUCGCCACc -3'
miRNA:   3'- uuCACCG-------AGCu------GCCGC-CGaAGCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 210422 0.66 0.801391
Target:  5'- -cGUGGUcggCGugGGCGGCgacggcagcguacugUGCUACg -3'
miRNA:   3'- uuCACCGa--GCugCCGCCGaa-------------GCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 122598 0.66 0.798816
Target:  5'- ---aGGCauugaccaccccggCGACGGCGGCg--GCCGCg -3'
miRNA:   3'- uucaCCGa-------------GCUGCCGCCGaagCGGUG- -5'
14160 3' -59.9 NC_003521.1 + 34212 0.66 0.795364
Target:  5'- aGGGcGGCguaGACGGCGcccGUgUCGCCGCa -3'
miRNA:   3'- -UUCaCCGag-CUGCCGC---CGaAGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.