miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 3' -53.9 NC_003521.1 + 73087 0.66 0.980807
Target:  5'- --cCGCcGGCCAcCGcAGCGCCAc---- -3'
miRNA:   3'- gaaGCGuCCGGU-GC-UCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 229242 0.66 0.973643
Target:  5'- --cCGCGGGCCGCGgaGGUGCUu----- -3'
miRNA:   3'- gaaGCGUCCGGUGC--UCGCGGuauaaa -5'
14165 3' -53.9 NC_003521.1 + 110975 0.66 0.973643
Target:  5'- -gUCGCAguagcagggcacGGCCACGGGCcCCAg---- -3'
miRNA:   3'- gaAGCGU------------CCGGUGCUCGcGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 43838 0.66 0.976217
Target:  5'- --cCGCcGGCCGCGGGC-CCGUc--- -3'
miRNA:   3'- gaaGCGuCCGGUGCUCGcGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 224599 0.66 0.980807
Target:  5'- uUUCGCAcucGGCCAggcggcaGGGCGCCGc---- -3'
miRNA:   3'- gAAGCGU---CCGGUg------CUCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 64018 0.66 0.976217
Target:  5'- --cUGCAGGCgCugGAGCGCa------ -3'
miRNA:   3'- gaaGCGUCCG-GugCUCGCGguauaaa -5'
14165 3' -53.9 NC_003521.1 + 88174 0.66 0.982836
Target:  5'- -cUCGCAGGUgACG-GCGUCGc---- -3'
miRNA:   3'- gaAGCGUCCGgUGCuCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 115392 0.66 0.978603
Target:  5'- --gUGCAGGgCGCGGGCgGCCGc---- -3'
miRNA:   3'- gaaGCGUCCgGUGCUCG-CGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 56735 0.66 0.982836
Target:  5'- -aUCaGC-GGUC-CGAGCGCCAUGg-- -3'
miRNA:   3'- gaAG-CGuCCGGuGCUCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 180857 0.66 0.980807
Target:  5'- --cCGCGGGUCagGCGGGCGUUGUGg-- -3'
miRNA:   3'- gaaGCGUCCGG--UGCUCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 153467 0.66 0.973643
Target:  5'- -cUCGCAGGCCACGuacaCGCgGa---- -3'
miRNA:   3'- gaAGCGUCCGGUGCuc--GCGgUauaaa -5'
14165 3' -53.9 NC_003521.1 + 215439 0.66 0.976217
Target:  5'- ---aGCAGaGCCGCGGGUGCUg----- -3'
miRNA:   3'- gaagCGUC-CGGUGCUCGCGGuauaaa -5'
14165 3' -53.9 NC_003521.1 + 13923 0.66 0.973643
Target:  5'- --gCGgAGGCCGCGcuGGCcGCCGUGg-- -3'
miRNA:   3'- gaaGCgUCCGGUGC--UCG-CGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 34703 0.66 0.976217
Target:  5'- -gUCGUAGGCgaagACG-GCGCCGUGc-- -3'
miRNA:   3'- gaAGCGUCCGg---UGCuCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 88603 0.66 0.982836
Target:  5'- -aUUGCccacaGCCACGuGCGCCGUGa-- -3'
miRNA:   3'- gaAGCGuc---CGGUGCuCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 69559 0.66 0.973643
Target:  5'- --gCGCAGGCCACaGAGgGUCu----- -3'
miRNA:   3'- gaaGCGUCCGGUG-CUCgCGGuauaaa -5'
14165 3' -53.9 NC_003521.1 + 100242 0.66 0.970872
Target:  5'- -cUCGCcGGCCGCGAaauccucgggcgGCGCCuggGUg- -3'
miRNA:   3'- gaAGCGuCCGGUGCU------------CGCGGua-UAaa -5'
14165 3' -53.9 NC_003521.1 + 31794 0.66 0.978603
Target:  5'- -cUCGCagaAGGCCGaguagaggcguuUGAGCGCCGUc--- -3'
miRNA:   3'- gaAGCG---UCCGGU------------GCUCGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 172366 0.66 0.970872
Target:  5'- ---gGUGGGUCACGGGCaCCGUGUg- -3'
miRNA:   3'- gaagCGUCCGGUGCUCGcGGUAUAaa -5'
14165 3' -53.9 NC_003521.1 + 211318 0.66 0.970584
Target:  5'- -aUCGCGGGucaacaggcggucCCGCGGGCGCgAgugGUUg -3'
miRNA:   3'- gaAGCGUCC-------------GGUGCUCGCGgUa--UAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.