miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 3' -53.9 NC_003521.1 + 50055 0.68 0.931144
Target:  5'- -gUCGUAGGCCuccCGAGCGagucCCGUGa-- -3'
miRNA:   3'- gaAGCGUCCGGu--GCUCGC----GGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 224020 0.69 0.896025
Target:  5'- ---gGCGGGCCcggcggucgggGCGGGCGCCGUc--- -3'
miRNA:   3'- gaagCGUCCGG-----------UGCUCGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 66671 0.69 0.896025
Target:  5'- --cUGCAGGcCCugGAGCGUCAc---- -3'
miRNA:   3'- gaaGCGUCC-GGugCUCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 67583 0.69 0.908681
Target:  5'- --cCGCGGGCCA-GAGuCGCCAa---- -3'
miRNA:   3'- gaaGCGUCCGGUgCUC-GCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 27114 0.69 0.914656
Target:  5'- --gCGCAGGCCgguGCGGGCGaacuCCAUGa-- -3'
miRNA:   3'- gaaGCGUCCGG---UGCUCGC----GGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 234147 0.69 0.919829
Target:  5'- --gCGCAGGCCcugcagcACGAGCGggaCAUGUUc -3'
miRNA:   3'- gaaGCGUCCGG-------UGCUCGCg--GUAUAAa -5'
14165 3' -53.9 NC_003521.1 + 5694 0.69 0.920392
Target:  5'- --cCGCGGGgaACGGGCGCCGUc--- -3'
miRNA:   3'- gaaGCGUCCggUGCUCGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 64351 0.69 0.920392
Target:  5'- --cUGCAGGCCcUGGGCGCCcUGg-- -3'
miRNA:   3'- gaaGCGUCCGGuGCUCGCGGuAUaaa -5'
14165 3' -53.9 NC_003521.1 + 130753 0.69 0.920392
Target:  5'- -gUCgGCGGG-CGCGAGCGCCGc---- -3'
miRNA:   3'- gaAG-CGUCCgGUGCUCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 78798 0.7 0.889349
Target:  5'- -gUCGCAGGUCgACGAGCgGCCcUGg-- -3'
miRNA:   3'- gaAGCGUCCGG-UGCUCG-CGGuAUaaa -5'
14165 3' -53.9 NC_003521.1 + 74645 0.7 0.875318
Target:  5'- --gCGCGGGacCCugGAGCGCCGc---- -3'
miRNA:   3'- gaaGCGUCC--GGugCUCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 59037 0.71 0.844685
Target:  5'- -cUCGCGcuuGGCCuuGAGCGCCGUc--- -3'
miRNA:   3'- gaAGCGU---CCGGugCUCGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 181320 0.74 0.665963
Target:  5'- --cCGCGGGCCA-GGGCGCCGUc--- -3'
miRNA:   3'- gaaGCGUCCGGUgCUCGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 105804 0.73 0.726416
Target:  5'- --aCGCAGGCCACG-GUGCCcgGc-- -3'
miRNA:   3'- gaaGCGUCCGGUGCuCGCGGuaUaaa -5'
14165 3' -53.9 NC_003521.1 + 53408 0.73 0.726416
Target:  5'- -cUUGCGGGCguCGGGCGCCAc---- -3'
miRNA:   3'- gaAGCGUCCGguGCUCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 76178 0.73 0.746012
Target:  5'- -gUCGCGGGCCuGCGugaGGCGCCAc---- -3'
miRNA:   3'- gaAGCGUCCGG-UGC---UCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 204086 0.73 0.755664
Target:  5'- -gUCGUGGGCCACGugcaccugguGGCGCCAc---- -3'
miRNA:   3'- gaAGCGUCCGGUGC----------UCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 62074 0.71 0.819655
Target:  5'- cCUUC-CAGGCCACGuGCGaCCAg---- -3'
miRNA:   3'- -GAAGcGUCCGGUGCuCGC-GGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 103295 0.71 0.82818
Target:  5'- -gUCGUAGGCCACcacGCGCCGg---- -3'
miRNA:   3'- gaAGCGUCCGGUGcu-CGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 49579 0.71 0.836525
Target:  5'- --gCGUGGGCCGCG-GCGCCGc---- -3'
miRNA:   3'- gaaGCGUCCGGUGCuCGCGGUauaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.