miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 3' -53.9 NC_003521.1 + 5694 0.69 0.920392
Target:  5'- --cCGCGGGgaACGGGCGCCGUc--- -3'
miRNA:   3'- gaaGCGUCCggUGCUCGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 10889 0.67 0.953855
Target:  5'- -aUgGUAGGCagaauaaaCACGAGCGCCAa---- -3'
miRNA:   3'- gaAgCGUCCG--------GUGCUCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 13923 0.66 0.973643
Target:  5'- --gCGgAGGCCGCGcuGGCcGCCGUGg-- -3'
miRNA:   3'- gaaGCgUCCGGUGC--UCG-CGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 15240 0.74 0.676159
Target:  5'- --gCGCgAGGCCGcCGAGCGCCAg---- -3'
miRNA:   3'- gaaGCG-UCCGGU-GCUCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 17233 0.67 0.961316
Target:  5'- -cUCGgAGGCCGagguggaGGcGCGCCGUAUUc -3'
miRNA:   3'- gaAGCgUCCGGUg------CU-CGCGGUAUAAa -5'
14165 3' -53.9 NC_003521.1 + 19119 0.68 0.945478
Target:  5'- --aCGCGGGUgGCGGGcCGCCGg---- -3'
miRNA:   3'- gaaGCGUCCGgUGCUC-GCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 19189 0.72 0.765207
Target:  5'- --cCGCGGGCgGCGAGCuaagGCCAUGc-- -3'
miRNA:   3'- gaaGCGUCCGgUGCUCG----CGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 23993 0.7 0.889349
Target:  5'- --cCGCGGGCUGCGAccuccugcGCGCCAUc--- -3'
miRNA:   3'- gaaGCGUCCGGUGCU--------CGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 24599 0.67 0.964715
Target:  5'- -cUCGUAGGCCucgucuGCGuGUGCCAg---- -3'
miRNA:   3'- gaAGCGUCCGG------UGCuCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 27114 0.69 0.914656
Target:  5'- --gCGCAGGCCgguGCGGGCGaacuCCAUGa-- -3'
miRNA:   3'- gaaGCGUCCGG---UGCUCGC----GGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 28756 0.67 0.964715
Target:  5'- --gCGCGGGCCGCGccaccgcccuAGCGCUg----- -3'
miRNA:   3'- gaaGCGUCCGGUGC----------UCGCGGuauaaa -5'
14165 3' -53.9 NC_003521.1 + 30708 0.67 0.967898
Target:  5'- --aCGCGGcGCCGCGGGC-UCAUGUc- -3'
miRNA:   3'- gaaGCGUC-CGGUGCUCGcGGUAUAaa -5'
14165 3' -53.9 NC_003521.1 + 31794 0.66 0.978603
Target:  5'- -cUCGCagaAGGCCGaguagaggcguuUGAGCGCCGUc--- -3'
miRNA:   3'- gaAGCG---UCCGGU------------GCUCGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 32083 0.68 0.936161
Target:  5'- --cCGU-GGCCACGgccAGCGCCAUGc-- -3'
miRNA:   3'- gaaGCGuCCGGUGC---UCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 33205 0.67 0.957698
Target:  5'- --gUGCAGGCCgGCGAGcCGCCc----- -3'
miRNA:   3'- gaaGCGUCCGG-UGCUC-GCGGuauaaa -5'
14165 3' -53.9 NC_003521.1 + 34291 0.77 0.533808
Target:  5'- ---gGCGGGCCACGGGCGUCAc---- -3'
miRNA:   3'- gaagCGUCCGGUGCUCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 34703 0.66 0.976217
Target:  5'- -gUCGUAGGCgaagACG-GCGCCGUGc-- -3'
miRNA:   3'- gaAGCGUCCGg---UGCuCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 35633 0.68 0.949783
Target:  5'- uUUCGCAGGUCccgcacgcgcuGCGAGCGgCAg---- -3'
miRNA:   3'- gAAGCGUCCGG-----------UGCUCGCgGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 37470 0.68 0.945478
Target:  5'- --gCGCGGGCCACcguGGUGCCGc---- -3'
miRNA:   3'- gaaGCGUCCGGUGc--UCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 38802 0.68 0.936649
Target:  5'- aUUCGCcggacccccggaccuGGUCGCG-GCGCCGUGUUc -3'
miRNA:   3'- gAAGCGu--------------CCGGUGCuCGCGGUAUAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.