Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14165 | 3' | -53.9 | NC_003521.1 | + | 100192 | 1.06 | 0.009282 |
Target: 5'- gCUUCGCAGGCCACGAGCGCCAUAUUUa -3' miRNA: 3'- -GAAGCGUCCGGUGCUCGCGGUAUAAA- -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 34291 | 0.77 | 0.533808 |
Target: 5'- ---gGCGGGCCACGGGCGUCAc---- -3' miRNA: 3'- gaagCGUCCGGUGCUCGCGGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 214384 | 0.75 | 0.645497 |
Target: 5'- -gUUGCAGGCCACGAacaGCGCCc----- -3' miRNA: 3'- gaAGCGUCCGGUGCU---CGCGGuauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 181320 | 0.74 | 0.665963 |
Target: 5'- --cCGCGGGCCA-GGGCGCCGUc--- -3' miRNA: 3'- gaaGCGUCCGGUgCUCGCGGUAuaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 164656 | 0.74 | 0.676159 |
Target: 5'- --aCGCAGGcCCGCGAcaccuguaccuGCGCCGUGUg- -3' miRNA: 3'- gaaGCGUCC-GGUGCU-----------CGCGGUAUAaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 15240 | 0.74 | 0.676159 |
Target: 5'- --gCGCgAGGCCGcCGAGCGCCAg---- -3' miRNA: 3'- gaaGCG-UCCGGU-GCUCGCGGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 105804 | 0.73 | 0.726416 |
Target: 5'- --aCGCAGGCCACG-GUGCCcgGc-- -3' miRNA: 3'- gaaGCGUCCGGUGCuCGCGGuaUaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 53408 | 0.73 | 0.726416 |
Target: 5'- -cUUGCGGGCguCGGGCGCCAc---- -3' miRNA: 3'- gaAGCGUCCGguGCUCGCGGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 76178 | 0.73 | 0.746012 |
Target: 5'- -gUCGCGGGCCuGCGugaGGCGCCAc---- -3' miRNA: 3'- gaAGCGUCCGG-UGC---UCGCGGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 204086 | 0.73 | 0.755664 |
Target: 5'- -gUCGUGGGCCACGugcaccugguGGCGCCAc---- -3' miRNA: 3'- gaAGCGUCCGGUGC----------UCGCGGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 19189 | 0.72 | 0.765207 |
Target: 5'- --cCGCGGGCgGCGAGCuaagGCCAUGc-- -3' miRNA: 3'- gaaGCGUCCGgUGCUCG----CGGUAUaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 167669 | 0.72 | 0.765207 |
Target: 5'- -gUCGCAGGCCgagGCG-GCGCCGc---- -3' miRNA: 3'- gaAGCGUCCGG---UGCuCGCGGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 152735 | 0.72 | 0.800309 |
Target: 5'- aCUUCGCcgaguggcccguGGUCACGGGCGCCGc---- -3' miRNA: 3'- -GAAGCGu-----------CCGGUGCUCGCGGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 74225 | 0.72 | 0.8021 |
Target: 5'- ---aGCAGGCCGuCG-GCGCCGUGa-- -3' miRNA: 3'- gaagCGUCCGGU-GCuCGCGGUAUaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 62074 | 0.71 | 0.819655 |
Target: 5'- cCUUC-CAGGCCACGuGCGaCCAg---- -3' miRNA: 3'- -GAAGcGUCCGGUGCuCGC-GGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 103295 | 0.71 | 0.82818 |
Target: 5'- -gUCGUAGGCCACcacGCGCCGg---- -3' miRNA: 3'- gaAGCGUCCGGUGcu-CGCGGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 49579 | 0.71 | 0.836525 |
Target: 5'- --gCGUGGGCCGCG-GCGCCGc---- -3' miRNA: 3'- gaaGCGUCCGGUGCuCGCGGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 59037 | 0.71 | 0.844685 |
Target: 5'- -cUCGCGcuuGGCCuuGAGCGCCGUc--- -3' miRNA: 3'- gaAGCGU---CCGGugCUCGCGGUAuaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 74645 | 0.7 | 0.875318 |
Target: 5'- --gCGCGGGacCCugGAGCGCCGc---- -3' miRNA: 3'- gaaGCGUCC--GGugCUCGCGGUauaaa -5' |
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14165 | 3' | -53.9 | NC_003521.1 | + | 78798 | 0.7 | 0.889349 |
Target: 5'- -gUCGCAGGUCgACGAGCgGCCcUGg-- -3' miRNA: 3'- gaAGCGUCCGG-UGCUCG-CGGuAUaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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