miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 5' -61.8 NC_003521.1 + 86170 0.66 0.773554
Target:  5'- uCGAAGaCGGugcgcaccAGCGaCUCGCgGGCCaCGg -3'
miRNA:   3'- -GCUUC-GCC--------UCGCaGAGCGgCCGGcGC- -5'
14165 5' -61.8 NC_003521.1 + 188231 0.66 0.763971
Target:  5'- uCGAAGCGGucgcagcAGCGguugaGCCaGCCGCa -3'
miRNA:   3'- -GCUUCGCC-------UCGCagag-CGGcCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 75519 0.66 0.798167
Target:  5'- aGGAGCucauccaGGAGCuguGUCaguucagcggCGCCGGCgGCGg -3'
miRNA:   3'- gCUUCG-------CCUCG---CAGa---------GCGGCCGgCGC- -5'
14165 5' -61.8 NC_003521.1 + 100729 0.66 0.773554
Target:  5'- gGAGGCGGGGgGUUcaugUCGUCGuCCGgGg -3'
miRNA:   3'- gCUUCGCCUCgCAG----AGCGGCcGGCgC- -5'
14165 5' -61.8 NC_003521.1 + 56884 0.66 0.790637
Target:  5'- gCGAGGUGGAaaGCGaga-GCUGGCCGUc -3'
miRNA:   3'- -GCUUCGCCU--CGCagagCGGCCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 26531 0.66 0.773554
Target:  5'- aCGGAGCcaaGGAGCGUCgaCGCUuuauGCCaGCGa -3'
miRNA:   3'- -GCUUCG---CCUCGCAGa-GCGGc---CGG-CGC- -5'
14165 5' -61.8 NC_003521.1 + 39010 0.66 0.764847
Target:  5'- uCGAGGcCGGAGCGgg-CGCC-GCCGa- -3'
miRNA:   3'- -GCUUC-GCCUCGCagaGCGGcCGGCgc -5'
14165 5' -61.8 NC_003521.1 + 110629 0.66 0.773554
Target:  5'- ---cGCGGgcaucGGCaUCUCGCCGGgCGCc -3'
miRNA:   3'- gcuuCGCC-----UCGcAGAGCGGCCgGCGc -5'
14165 5' -61.8 NC_003521.1 + 25548 0.66 0.782153
Target:  5'- gCGAcGGCGGAcGCuGUUgugcaGgCGGCCGCGg -3'
miRNA:   3'- -GCU-UCGCCU-CG-CAGag---CgGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 179236 0.66 0.763971
Target:  5'- cCGccGCGGgccuucuGGCGccugaaCUCGCCGGCCaGCa -3'
miRNA:   3'- -GCuuCGCC-------UCGCa-----GAGCGGCCGG-CGc -5'
14165 5' -61.8 NC_003521.1 + 148423 0.66 0.790637
Target:  5'- uGguGCGG-GCGgccgCGCCGGCgGCu -3'
miRNA:   3'- gCuuCGCCuCGCaga-GCGGCCGgCGc -5'
14165 5' -61.8 NC_003521.1 + 100696 0.66 0.764847
Target:  5'- uGAuGCGGAgGCG-C-CGCCgcGGCCGCu -3'
miRNA:   3'- gCUuCGCCU-CGCaGaGCGG--CCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 209510 0.66 0.764847
Target:  5'- ---cGUGGGGgGUCacggugaccgUCGCCGcuGCCGCGg -3'
miRNA:   3'- gcuuCGCCUCgCAG----------AGCGGC--CGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 192165 0.66 0.764847
Target:  5'- aGGucuGCGG--UGUCagCGCCGGUCGCGg -3'
miRNA:   3'- gCUu--CGCCucGCAGa-GCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 116203 0.66 0.782153
Target:  5'- aGGAG-GGAGaCGUCgccgUCGCCG-CCGCu -3'
miRNA:   3'- gCUUCgCCUC-GCAG----AGCGGCcGGCGc -5'
14165 5' -61.8 NC_003521.1 + 112367 0.66 0.764847
Target:  5'- aCGcGGCGGcugcGGCGUCUCGUCcaccuGGCUgGCGc -3'
miRNA:   3'- -GCuUCGCC----UCGCAGAGCGG-----CCGG-CGC- -5'
14165 5' -61.8 NC_003521.1 + 207612 0.66 0.815327
Target:  5'- aGAuccGUcuGGGCGgCUCGCCGGCCuGCa -3'
miRNA:   3'- gCUu--CGc-CUCGCaGAGCGGCCGG-CGc -5'
14165 5' -61.8 NC_003521.1 + 149031 0.66 0.790637
Target:  5'- gCGgcGUGGAGauUCUCGa-GGCCGUGc -3'
miRNA:   3'- -GCuuCGCCUCgcAGAGCggCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 45307 0.66 0.798998
Target:  5'- aGGAGcCGGAGCccga-GCUGGCCGaCGg -3'
miRNA:   3'- gCUUC-GCCUCGcagagCGGCCGGC-GC- -5'
14165 5' -61.8 NC_003521.1 + 106550 0.66 0.782153
Target:  5'- -aAAGCGcGAGUGg---GCCGGUCGCGa -3'
miRNA:   3'- gcUUCGC-CUCGCagagCGGCCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.