miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 5' -61.8 NC_003521.1 + 238521 0.69 0.616733
Target:  5'- -cGAGCaGGuGCGagagCUCGUCGGCCaGCGg -3'
miRNA:   3'- gcUUCG-CCuCGCa---GAGCGGCCGG-CGC- -5'
14165 5' -61.8 NC_003521.1 + 92001 0.7 0.56969
Target:  5'- aCGGAGCgGGAGCGgcgaggcgCGgCGGCgGCGg -3'
miRNA:   3'- -GCUUCG-CCUCGCaga-----GCgGCCGgCGC- -5'
14165 5' -61.8 NC_003521.1 + 218392 0.7 0.56969
Target:  5'- uGAAGCGcGGGCGguaCUCgGCCacGCCGCGc -3'
miRNA:   3'- gCUUCGC-CUCGCa--GAG-CGGc-CGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 168546 0.7 0.579045
Target:  5'- gCGcGGCGGcGGCG-CUgGCgGGCUGCGg -3'
miRNA:   3'- -GCuUCGCC-UCGCaGAgCGgCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 221822 0.7 0.579045
Target:  5'- gCGggGCGG-GCGUgucuccCUCGUCGcGCgGCGc -3'
miRNA:   3'- -GCuuCGCCuCGCA------GAGCGGC-CGgCGC- -5'
14165 5' -61.8 NC_003521.1 + 57234 0.69 0.607282
Target:  5'- aGAGGC-GAGCGgcUCUCGCgCGGCCa-- -3'
miRNA:   3'- gCUUCGcCUCGC--AGAGCG-GCCGGcgc -5'
14165 5' -61.8 NC_003521.1 + 223006 0.69 0.607282
Target:  5'- gGcGGUGGGGguCGUCgucCGCCGGUCGCa -3'
miRNA:   3'- gCuUCGCCUC--GCAGa--GCGGCCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 116010 0.69 0.616733
Target:  5'- aGGAGC--AGCGUCUC-CaGGCCGCGg -3'
miRNA:   3'- gCUUCGccUCGCAGAGcGgCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 193275 0.69 0.616733
Target:  5'- gCGGAGCGGgugccgggacgGGCGUCggaGUCGG-CGCGg -3'
miRNA:   3'- -GCUUCGCC-----------UCGCAGag-CGGCCgGCGC- -5'
14165 5' -61.8 NC_003521.1 + 221891 0.7 0.551099
Target:  5'- gCGu-GUGGGGCGgaUUGCCGGCgCGCGg -3'
miRNA:   3'- -GCuuCGCCUCGCagAGCGGCCG-GCGC- -5'
14165 5' -61.8 NC_003521.1 + 57135 0.7 0.541872
Target:  5'- aCGAAGCGauAG-GUCUCGUCGGCCacgcGCGg -3'
miRNA:   3'- -GCUUCGCc-UCgCAGAGCGGCCGG----CGC- -5'
14165 5' -61.8 NC_003521.1 + 75976 0.71 0.532697
Target:  5'- cCGAcGaGGAGCGgccCUCGCCGGgCGCc -3'
miRNA:   3'- -GCUuCgCCUCGCa--GAGCGGCCgGCGc -5'
14165 5' -61.8 NC_003521.1 + 100604 0.75 0.29642
Target:  5'- aCGAGGCGGcgaAGCGUCUC-UUGGCCGgGg -3'
miRNA:   3'- -GCUUCGCC---UCGCAGAGcGGCCGGCgC- -5'
14165 5' -61.8 NC_003521.1 + 126959 0.73 0.395913
Target:  5'- cCGccGCGGAacccgcGcCGUCgUCGCCGGCCGCc -3'
miRNA:   3'- -GCuuCGCCU------C-GCAG-AGCGGCCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 191035 0.73 0.41178
Target:  5'- -cGGGCGGcAGCGUCU-GCUGGCCGaCGc -3'
miRNA:   3'- gcUUCGCC-UCGCAGAgCGGCCGGC-GC- -5'
14165 5' -61.8 NC_003521.1 + 153638 0.73 0.41986
Target:  5'- --cAGCGGGuGCGUCUCgguggagcgcuGCaCGGCCGCGc -3'
miRNA:   3'- gcuUCGCCU-CGCAGAG-----------CG-GCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 146169 0.72 0.436303
Target:  5'- gCGAGGUGGGccGCGagUUGCUGGCCgGCGg -3'
miRNA:   3'- -GCUUCGCCU--CGCagAGCGGCCGG-CGC- -5'
14165 5' -61.8 NC_003521.1 + 123497 0.72 0.453112
Target:  5'- --cGGCGGGGUGUCgucgUCGCCGcuGCCGCc -3'
miRNA:   3'- gcuUCGCCUCGCAG----AGCGGC--CGGCGc -5'
14165 5' -61.8 NC_003521.1 + 74581 0.72 0.470267
Target:  5'- aCGGAGCGGcggcgcGGCGUCccgCgGCCGGCgCGCc -3'
miRNA:   3'- -GCUUCGCC------UCGCAGa--G-CGGCCG-GCGc -5'
14165 5' -61.8 NC_003521.1 + 222382 0.71 0.4966
Target:  5'- uCGAAGCGGcacaggccgcGCGUCUUGagcaGGCCGCa -3'
miRNA:   3'- -GCUUCGCCu---------CGCAGAGCgg--CCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.