miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 5' -61.8 NC_003521.1 + 100228 1.08 0.001893
Target:  5'- uCGAAGCGGAGCGUCUCGCCGGCCGCGa -3'
miRNA:   3'- -GCUUCGCCUCGCAGAGCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 5316 0.8 0.16097
Target:  5'- gGggGCGGcGUGcCcCGCCGGCCGCGa -3'
miRNA:   3'- gCuuCGCCuCGCaGaGCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 232375 0.8 0.1648
Target:  5'- gCGAAGCGGAGguccacCGUCUCGCgcUGGCUGCGc -3'
miRNA:   3'- -GCUUCGCCUC------GCAGAGCG--GCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 166217 0.76 0.271807
Target:  5'- uGgcGCGGcGGCGaggCgCGCCGGCCGCGg -3'
miRNA:   3'- gCuuCGCC-UCGCa--GaGCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 100604 0.75 0.29642
Target:  5'- aCGAGGCGGcgaAGCGUCUC-UUGGCCGgGg -3'
miRNA:   3'- -GCUUCGCC---UCGCAGAGcGGCCGGCgC- -5'
14165 5' -61.8 NC_003521.1 + 185711 0.73 0.380446
Target:  5'- uGAGGUcc-GCGUCUCGCCGGgUGCGg -3'
miRNA:   3'- gCUUCGccuCGCAGAGCGGCCgGCGC- -5'
14165 5' -61.8 NC_003521.1 + 126959 0.73 0.395913
Target:  5'- cCGccGCGGAacccgcGcCGUCgUCGCCGGCCGCc -3'
miRNA:   3'- -GCuuCGCCU------C-GCAG-AGCGGCCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 221746 0.73 0.395913
Target:  5'- -cAAGCGGAacgacagcgucaGCGUCUgCGCCGcGCCGCc -3'
miRNA:   3'- gcUUCGCCU------------CGCAGA-GCGGC-CGGCGc -5'
14165 5' -61.8 NC_003521.1 + 118006 0.73 0.403797
Target:  5'- aCGGuAGCGGcGGCGUgUCGCUG-CCGCGg -3'
miRNA:   3'- -GCU-UCGCC-UCGCAgAGCGGCcGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 98467 0.73 0.41178
Target:  5'- gGAGGCGGcGGCGgccgCGgCGGCCGUGg -3'
miRNA:   3'- gCUUCGCC-UCGCaga-GCgGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 191035 0.73 0.41178
Target:  5'- -cGGGCGGcAGCGUCU-GCUGGCCGaCGc -3'
miRNA:   3'- gcUUCGCC-UCGCAGAgCGGCCGGC-GC- -5'
14165 5' -61.8 NC_003521.1 + 153638 0.73 0.41986
Target:  5'- --cAGCGGGuGCGUCUCgguggagcgcuGCaCGGCCGCGc -3'
miRNA:   3'- gcuUCGCCU-CGCAGAG-----------CG-GCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 99955 0.73 0.41986
Target:  5'- gGggGCGGcGGCGcCUCgGCCGaGaCCGCGa -3'
miRNA:   3'- gCuuCGCC-UCGCaGAG-CGGC-C-GGCGC- -5'
14165 5' -61.8 NC_003521.1 + 36966 0.72 0.436303
Target:  5'- uCGcAGCGGAGCGggugCUCGgCGGCgacaucCGCGa -3'
miRNA:   3'- -GCuUCGCCUCGCa---GAGCgGCCG------GCGC- -5'
14165 5' -61.8 NC_003521.1 + 146169 0.72 0.436303
Target:  5'- gCGAGGUGGGccGCGagUUGCUGGCCgGCGg -3'
miRNA:   3'- -GCUUCGCCU--CGCagAGCGGCCGG-CGC- -5'
14165 5' -61.8 NC_003521.1 + 197256 0.72 0.453112
Target:  5'- aGGAGCGGugcuugacGCGg--CGCCGGCgGCGg -3'
miRNA:   3'- gCUUCGCCu-------CGCagaGCGGCCGgCGC- -5'
14165 5' -61.8 NC_003521.1 + 123497 0.72 0.453112
Target:  5'- --cGGCGGGGUGUCgucgUCGCCGcuGCCGCc -3'
miRNA:   3'- gcuUCGCCUCGCAG----AGCGGC--CGGCGc -5'
14165 5' -61.8 NC_003521.1 + 74581 0.72 0.470267
Target:  5'- aCGGAGCGGcggcgcGGCGUCccgCgGCCGGCgCGCc -3'
miRNA:   3'- -GCUUCGCC------UCGCAGa--G-CGGCCG-GCGc -5'
14165 5' -61.8 NC_003521.1 + 139301 0.71 0.487746
Target:  5'- aCGGAGCuGcAGCGccugCUgGUCGGCCGCGu -3'
miRNA:   3'- -GCUUCGcC-UCGCa---GAgCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 222382 0.71 0.4966
Target:  5'- uCGAAGCGGcacaggccgcGCGUCUUGagcaGGCCGCa -3'
miRNA:   3'- -GCUUCGCCu---------CGCAGAGCgg--CCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.