miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 5' -61.8 NC_003521.1 + 5316 0.8 0.16097
Target:  5'- gGggGCGGcGUGcCcCGCCGGCCGCGa -3'
miRNA:   3'- gCuuCGCCuCGCaGaGCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 6306 0.66 0.764847
Target:  5'- uCGAAGCuggcugaaagGGAuccCGUCUUGCCGGCgauaggaucCGCGg -3'
miRNA:   3'- -GCUUCG----------CCUc--GCAGAGCGGCCG---------GCGC- -5'
14165 5' -61.8 NC_003521.1 + 13855 0.7 0.560373
Target:  5'- uCGgcGCGGGG-GUCUCuGCgGGCgGCGc -3'
miRNA:   3'- -GCuuCGCCUCgCAGAG-CGgCCGgCGC- -5'
14165 5' -61.8 NC_003521.1 + 13906 0.69 0.635661
Target:  5'- cCGgcGCGGAGgGggccgCggaggccgCGCUGGCCGCc -3'
miRNA:   3'- -GCuuCGCCUCgCa----Ga-------GCGGCCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 14726 0.66 0.764847
Target:  5'- aCGccGUGGuaucuguugGGCGUgaCggGCCGGCCGCGg -3'
miRNA:   3'- -GCuuCGCC---------UCGCA--GagCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 17750 0.67 0.728174
Target:  5'- cCGAGGcCGGGGaacuggcCGUaC-CGCCGGCgGCGg -3'
miRNA:   3'- -GCUUC-GCCUC-------GCA-GaGCGGCCGgCGC- -5'
14165 5' -61.8 NC_003521.1 + 20280 0.7 0.550174
Target:  5'- --cAGCGGAGUGcgguggaUCUCGCCGGCgccaUGCa -3'
miRNA:   3'- gcuUCGCCUCGC-------AGAGCGGCCG----GCGc -5'
14165 5' -61.8 NC_003521.1 + 22163 0.69 0.634714
Target:  5'- gGGAGaCGGuggagagggacgaGGCG-C-CGCCGGCCGUGg -3'
miRNA:   3'- gCUUC-GCC-------------UCGCaGaGCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 25144 0.69 0.645123
Target:  5'- gGAGGCGGuacGGCGUUcuggucgcgcuuUCGCUGcucccGCCGCGa -3'
miRNA:   3'- gCUUCGCC---UCGCAG------------AGCGGC-----CGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 25311 0.66 0.781298
Target:  5'- aCGggGCGGu-CGUCUUccaggugGCCGGCaCGUu -3'
miRNA:   3'- -GCuuCGCCucGCAGAG-------CGGCCG-GCGc -5'
14165 5' -61.8 NC_003521.1 + 25548 0.66 0.782153
Target:  5'- gCGAcGGCGGAcGCuGUUgugcaGgCGGCCGCGg -3'
miRNA:   3'- -GCU-UCGCCU-CG-CAGag---CgGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 26531 0.66 0.773554
Target:  5'- aCGGAGCcaaGGAGCGUCgaCGCUuuauGCCaGCGa -3'
miRNA:   3'- -GCUUCG---CCUCGCAGa-GCGGc---CGG-CGC- -5'
14165 5' -61.8 NC_003521.1 + 27994 0.68 0.670612
Target:  5'- gCGGcAGCGuGAGCGgcacCUCGCUGuccuccuccagcacGCCGCGg -3'
miRNA:   3'- -GCU-UCGC-CUCGCa---GAGCGGC--------------CGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 30912 0.66 0.798998
Target:  5'- gCGGcaGGCGaGAGCgGUCcuggggcagUCGCCGuGCCGUa -3'
miRNA:   3'- -GCU--UCGC-CUCG-CAG---------AGCGGC-CGGCGc -5'
14165 5' -61.8 NC_003521.1 + 31811 0.66 0.815327
Target:  5'- aGAGGCGuuuGAGCGccgUCUCGgcCCGGgCGCc -3'
miRNA:   3'- gCUUCGC---CUCGC---AGAGC--GGCCgGCGc -5'
14165 5' -61.8 NC_003521.1 + 31867 0.67 0.75604
Target:  5'- gCGgcGCGGuGCGagCgguaccgcacCGCCaGGCCGCGg -3'
miRNA:   3'- -GCuuCGCCuCGCa-Ga---------GCGG-CCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 33441 0.69 0.595019
Target:  5'- uGAAGCugcuGGGGCucgcgcuguucucgGUgUCgGCCGGCCGCGc -3'
miRNA:   3'- gCUUCG----CCUCG--------------CAgAG-CGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 33649 0.68 0.691241
Target:  5'- aGggGCGGccagcagAGCGggauccagCGaCCGGCCGUGg -3'
miRNA:   3'- gCuuCGCC-------UCGCaga-----GC-GGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 36412 0.68 0.673434
Target:  5'- ---cGCGGGGCGUggauUUCGCggucggagGGCCGCGg -3'
miRNA:   3'- gcuuCGCCUCGCA----GAGCGg-------CCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 36884 0.66 0.815327
Target:  5'- -uGAGCGaGGGCGUCagGCa-GCCGUGg -3'
miRNA:   3'- gcUUCGC-CUCGCAGagCGgcCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.