miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 3' -51.1 NC_003521.1 + 109707 0.66 0.997758
Target:  5'- -cGGGcgaaGGCCGagaGGAAGGAGGCcAGGUg -3'
miRNA:   3'- caCCC----UUGGCg--UCUUCUUCUGcUUCG- -5'
14167 3' -51.1 NC_003521.1 + 24405 0.66 0.998114
Target:  5'- -cGGGc-CCGCGGAgcauAGAaagccAGACGgcGCa -3'
miRNA:   3'- caCCCuuGGCGUCU----UCU-----UCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 157282 0.66 0.997348
Target:  5'- -cGGGGcaacggcgGCCGCguacGGggGGAGGCGGGa- -3'
miRNA:   3'- caCCCU--------UGGCG----UCuuCUUCUGCUUcg -5'
14167 3' -51.1 NC_003521.1 + 57640 0.66 0.997348
Target:  5'- -cGGGGGCCGaaacgGGAcgGGAcGGCGAAGa -3'
miRNA:   3'- caCCCUUGGCg----UCU--UCUuCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 213075 0.66 0.997303
Target:  5'- -cGGcGGACgGCaaguuuuauauagAGGAGGAGACGcGGCu -3'
miRNA:   3'- caCC-CUUGgCG-------------UCUUCUUCUGCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 150533 0.66 0.997348
Target:  5'- -cGGGAGCCGUGGGguccGGcGGugGuGGUg -3'
miRNA:   3'- caCCCUUGGCGUCU----UCuUCugCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 119375 0.66 0.998685
Target:  5'- -gGGGAuguCCGCcgGGAAGAAGAucaCGucGUg -3'
miRNA:   3'- caCCCUu--GGCG--UCUUCUUCU---GCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 70367 0.66 0.99866
Target:  5'- -cGGGGuagaGCCGCAGgcGGcgguagagguagcGGGCGucguAGCg -3'
miRNA:   3'- caCCCU----UGGCGUCuuCU-------------UCUGCu---UCG- -5'
14167 3' -51.1 NC_003521.1 + 169979 0.66 0.997348
Target:  5'- cUGGGAgGCgGCGGcGGggGACgcuuuccauGAGGCc -3'
miRNA:   3'- cACCCU-UGgCGUCuUCuuCUG---------CUUCG- -5'
14167 3' -51.1 NC_003521.1 + 60516 0.66 0.997348
Target:  5'- -cGGGAggaGCUGCAcGGcaucuGGGAGACGguGCu -3'
miRNA:   3'- caCCCU---UGGCGU-CU-----UCUUCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 227572 0.66 0.998685
Target:  5'- ---aGAACgGCAGGuaGGAGGACGGaugaGGCa -3'
miRNA:   3'- caccCUUGgCGUCU--UCUUCUGCU----UCG- -5'
14167 3' -51.1 NC_003521.1 + 87058 0.66 0.997348
Target:  5'- -aGGaGAGCaGCGGGuGGAAGGCGGcGGCg -3'
miRNA:   3'- caCC-CUUGgCGUCU-UCUUCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 91502 0.66 0.998114
Target:  5'- aUGGGcACCaacaacagGCaauGGAGGuGGGCGGAGCg -3'
miRNA:   3'- cACCCuUGG--------CG---UCUUCuUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 71830 0.66 0.997348
Target:  5'- -aGGGAgacggcgcaGCCGguGuucuuAAGAUGAAGCa -3'
miRNA:   3'- caCCCU---------UGGCguCuuc--UUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 226883 0.66 0.998421
Target:  5'- -aGGGcAGCUGCGGggGcaccacGGCGGccAGCg -3'
miRNA:   3'- caCCC-UUGGCGUCuuCuu----CUGCU--UCG- -5'
14167 3' -51.1 NC_003521.1 + 195324 0.66 0.998421
Target:  5'- -cGGcGGAgCGCAacAGAGGuCGGAGCu -3'
miRNA:   3'- caCC-CUUgGCGUcuUCUUCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 19444 0.66 0.997758
Target:  5'- -cGGGAAgaCGaAGAGGAGGACGAcgAGg -3'
miRNA:   3'- caCCCUUg-GCgUCUUCUUCUGCU--UCg -5'
14167 3' -51.1 NC_003521.1 + 210738 0.66 0.998685
Target:  5'- --cGGAAUCGUAGGccguGGCGggGCa -3'
miRNA:   3'- cacCCUUGGCGUCUucuuCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 238449 0.66 0.997348
Target:  5'- --aGGAGgCGCAGGgcggccucGGcGGGCGggGCg -3'
miRNA:   3'- cacCCUUgGCGUCU--------UCuUCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 74126 0.66 0.997348
Target:  5'- aUGGGcGCCGUgcAGGAcGACGuGGCg -3'
miRNA:   3'- cACCCuUGGCGucUUCUuCUGCuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.