miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 3' -51.1 NC_003521.1 + 16904 0.66 0.998685
Target:  5'- gGUGGaGGACgaggagGCGGAcgauGAAGACGAGGa -3'
miRNA:   3'- -CACC-CUUGg-----CGUCUu---CUUCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 17723 0.74 0.878037
Target:  5'- cGUGGGuGCCGgGGGAGAacccgucGGcCGAGGCc -3'
miRNA:   3'- -CACCCuUGGCgUCUUCU-------UCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 18084 0.66 0.997758
Target:  5'- cUGGaGAcgacgGCCGCGGGgacGGAGGAgGuAGCg -3'
miRNA:   3'- cACC-CU-----UGGCGUCU---UCUUCUgCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 18649 0.67 0.996877
Target:  5'- cGUGGG-GCCGCAcGGAccugcuggccacGggGGCGcuGCa -3'
miRNA:   3'- -CACCCuUGGCGU-CUU------------CuuCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 18863 0.67 0.996163
Target:  5'- -cGuGGAGCUgucgugucagcugaGCAGcgacGAGGACGAGGCg -3'
miRNA:   3'- caC-CCUUGG--------------CGUCuu--CUUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 19099 0.75 0.84036
Target:  5'- -gGGGGA-CGgGGAGGGAGACGAcGCg -3'
miRNA:   3'- caCCCUUgGCgUCUUCUUCUGCUuCG- -5'
14167 3' -51.1 NC_003521.1 + 19428 0.66 0.998421
Target:  5'- cGUGGGuACgGagggugagaaaGGggGGAGGCGcGGCg -3'
miRNA:   3'- -CACCCuUGgCg----------UCuuCUUCUGCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 19444 0.66 0.997758
Target:  5'- -cGGGAAgaCGaAGAGGAGGACGAcgAGg -3'
miRNA:   3'- caCCCUUg-GCgUCUUCUUCUGCU--UCg -5'
14167 3' -51.1 NC_003521.1 + 19930 0.75 0.84036
Target:  5'- cUGGacGCCGCAGcAGAAGGCgGAAGCc -3'
miRNA:   3'- cACCcuUGGCGUCuUCUUCUG-CUUCG- -5'
14167 3' -51.1 NC_003521.1 + 22162 0.79 0.649832
Target:  5'- -cGGGAGaCGguGGAGAgGGACGAGGCg -3'
miRNA:   3'- caCCCUUgGCguCUUCU-UCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 24157 0.66 0.998685
Target:  5'- -cGGGGuACuCGCGGGgcacucggaaAGGAG-CGAAGCc -3'
miRNA:   3'- caCCCU-UG-GCGUCU----------UCUUCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 24405 0.66 0.998114
Target:  5'- -cGGGc-CCGCGGAgcauAGAaagccAGACGgcGCa -3'
miRNA:   3'- caCCCuuGGCGUCU----UCU-----UCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 29632 0.67 0.996339
Target:  5'- -cGGGAcuCCuCAGAGGAcgAGACcGAGCg -3'
miRNA:   3'- caCCCUu-GGcGUCUUCU--UCUGcUUCG- -5'
14167 3' -51.1 NC_003521.1 + 29979 0.67 0.996877
Target:  5'- gGUGGucuGGACgGaGGGAGggGACG-AGCg -3'
miRNA:   3'- -CACC---CUUGgCgUCUUCuuCUGCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 31837 0.68 0.988452
Target:  5'- -cGGGcGCCGaagguggcguuGAAGAAGACGGcGGCg -3'
miRNA:   3'- caCCCuUGGCgu---------CUUCUUCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 33684 0.68 0.991297
Target:  5'- aUGGGAACaagGCucgggaGGGAGAAGAgGAGGa -3'
miRNA:   3'- cACCCUUGg--CG------UCUUCUUCUgCUUCg -5'
14167 3' -51.1 NC_003521.1 + 34326 0.67 0.996877
Target:  5'- -aGGGAGCguuggaagcggCGCAGGGcGGAGGCcguGAGGCc -3'
miRNA:   3'- caCCCUUG-----------GCGUCUU-CUUCUG---CUUCG- -5'
14167 3' -51.1 NC_003521.1 + 37208 0.69 0.981901
Target:  5'- -gGGGGACCGCGGuuAGgcGGCcucgGggGUg -3'
miRNA:   3'- caCCCUUGGCGUCu-UCuuCUG----CuuCG- -5'
14167 3' -51.1 NC_003521.1 + 37331 0.68 0.992797
Target:  5'- gGUGGGGGCgguCGCGGAGGAcgcacguauccgccgGGACuGGucGGCg -3'
miRNA:   3'- -CACCCUUG---GCGUCUUCU---------------UCUG-CU--UCG- -5'
14167 3' -51.1 NC_003521.1 + 37510 0.66 0.998779
Target:  5'- -cGGGc-CCGCGGAcaucagcgacguccuGGggGugGGcAGCg -3'
miRNA:   3'- caCCCuuGGCGUCU---------------UCuuCugCU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.