miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 3' -51.1 NC_003521.1 + 271 0.72 0.943248
Target:  5'- -cGGGAcCCGCAGcGGAGGccggauCGGAGUg -3'
miRNA:   3'- caCCCUuGGCGUCuUCUUCu-----GCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 662 0.69 0.987255
Target:  5'- -gGGGGA-CGCGGAGGAGG--GggGCu -3'
miRNA:   3'- caCCCUUgGCGUCUUCUUCugCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 1347 0.69 0.987255
Target:  5'- --uGGAACUGaUAGAAGAccaAGACGAAGa -3'
miRNA:   3'- cacCCUUGGC-GUCUUCU---UCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 1538 0.7 0.975011
Target:  5'- -aGGGGAUgGCggugggcgAGAAGAGGagaacGCGGAGCg -3'
miRNA:   3'- caCCCUUGgCG--------UCUUCUUC-----UGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 4193 0.69 0.987255
Target:  5'- aUGGGAGCCaGguGAaaggaaAGggGGuuUGAAGCc -3'
miRNA:   3'- cACCCUUGG-CguCU------UCuuCU--GCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 4200 0.69 0.983845
Target:  5'- cUGGGAGCUgaaaGCGGAgggcgGGAAGGguguCGGAGCc -3'
miRNA:   3'- cACCCUUGG----CGUCU-----UCUUCU----GCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 4238 0.71 0.959212
Target:  5'- -aGGaGGACCGagacggGGAGGAGGACGAgaaggacGGCg -3'
miRNA:   3'- caCC-CUUGGCg-----UCUUCUUCUGCU-------UCG- -5'
14167 3' -51.1 NC_003521.1 + 5407 0.72 0.933672
Target:  5'- -cGGGGGCCuCGcccGAGGACGAGGCg -3'
miRNA:   3'- caCCCUUGGcGUcuuCUUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 6174 0.7 0.977491
Target:  5'- -cGGGGccaGgCGCAGAAcGAGACGAucuGCg -3'
miRNA:   3'- caCCCU---UgGCGUCUUcUUCUGCUu--CG- -5'
14167 3' -51.1 NC_003521.1 + 6435 0.72 0.930612
Target:  5'- -gGGGGGCCGCugcgacaacagcacgGGAGGAgcGGAUGAcGGCa -3'
miRNA:   3'- caCCCUUGGCG---------------UCUUCU--UCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 7392 0.66 0.998421
Target:  5'- -aGGG-ACCGCGucGAGGccGuCGGAGCc -3'
miRNA:   3'- caCCCuUGGCGU--CUUCuuCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 7978 0.72 0.917503
Target:  5'- -cGGGAggguccgcgGCgGCGGggGAGGuacCGggGCa -3'
miRNA:   3'- caCCCU---------UGgCGUCuuCUUCu--GCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 9380 0.66 0.998421
Target:  5'- aGUGcGGAAUgGC-GAuaauGAAGGCGAAGa -3'
miRNA:   3'- -CAC-CCUUGgCGuCUu---CUUCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 13426 0.69 0.985628
Target:  5'- aUGGGAACgguCGCcGAGGAcgacGGACGucAAGCg -3'
miRNA:   3'- cACCCUUG---GCGuCUUCU----UCUGC--UUCG- -5'
14167 3' -51.1 NC_003521.1 + 13643 0.72 0.943248
Target:  5'- cUGGGAaggGCgGCGGAggcGGGAGAaGAGGCu -3'
miRNA:   3'- cACCCU---UGgCGUCU---UCUUCUgCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 13851 0.7 0.975011
Target:  5'- uGUGacGACCGgAGggGAGGAUGggGg -3'
miRNA:   3'- -CACccUUGGCgUCuuCUUCUGCuuCg -5'
14167 3' -51.1 NC_003521.1 + 13899 0.73 0.905524
Target:  5'- -gGGGGGCCcggcGCGGAGGggGccGCGGAGg -3'
miRNA:   3'- caCCCUUGG----CGUCUUCuuC--UGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 15219 0.71 0.963088
Target:  5'- cGUGGG-GCUGCAGgcGGccgAGcGCGAGGCc -3'
miRNA:   3'- -CACCCuUGGCGUCuuCU---UC-UGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 15536 0.71 0.959575
Target:  5'- uGUGGcGAACgCGCuG-GGAAGAgGggGCg -3'
miRNA:   3'- -CACC-CUUG-GCGuCuUCUUCUgCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 15852 0.85 0.326094
Target:  5'- gGUGGGcGACCGCuacGAGGAGACGGAGCu -3'
miRNA:   3'- -CACCC-UUGGCGuc-UUCUUCUGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.