Results 1 - 20 of 261 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14167 | 3' | -51.1 | NC_003521.1 | + | 99487 | 1.14 | 0.007037 |
Target: 5'- cGUGGGAACCGCAGAAGAAGACGAAGCa -3' miRNA: 3'- -CACCCUUGGCGUCUUCUUCUGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 15852 | 0.85 | 0.326094 |
Target: 5'- gGUGGGcGACCGCuacGAGGAGACGGAGCu -3' miRNA: 3'- -CACCC-UUGGCGuc-UUCUUCUGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 168084 | 0.83 | 0.415304 |
Target: 5'- -gGGGGGCUGCAGAGGucGGCGAAGa -3' miRNA: 3'- caCCCUUGGCGUCUUCuuCUGCUUCg -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 103719 | 0.81 | 0.508181 |
Target: 5'- --cGGAACCuaGCAGAGGAugGGACGGAGCa -3' miRNA: 3'- cacCCUUGG--CGUCUUCU--UCUGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 71447 | 0.81 | 0.508181 |
Target: 5'- -cGGGGAUCGCGGggGAAGACau-GCg -3' miRNA: 3'- caCCCUUGGCGUCuuCUUCUGcuuCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 40870 | 0.8 | 0.567927 |
Target: 5'- -cGGuGAGCCGCGGAGGGaagGGAcCGggGCg -3' miRNA: 3'- caCC-CUUGGCGUCUUCU---UCU-GCuuCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 91270 | 0.8 | 0.567927 |
Target: 5'- -cGGGaAACCGgGGAAGAAGAaGGAGCg -3' miRNA: 3'- caCCC-UUGGCgUCUUCUUCUgCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 210639 | 0.8 | 0.598493 |
Target: 5'- --aGGAACCGCAGAAGAuccccacauAGACGcgGAGCa -3' miRNA: 3'- cacCCUUGGCGUCUUCU---------UCUGC--UUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 22162 | 0.79 | 0.649832 |
Target: 5'- -cGGGAGaCGguGGAGAgGGACGAGGCg -3' miRNA: 3'- caCCCUUgGCguCUUCU-UCUGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 124109 | 0.78 | 0.670325 |
Target: 5'- -cGGGAccGCCGUGGAAGuGGACGgcGCu -3' miRNA: 3'- caCCCU--UGGCGUCUUCuUCUGCuuCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 92298 | 0.78 | 0.670325 |
Target: 5'- -cGGGGAaggCGCGGGAGGAGGCGcAGCc -3' miRNA: 3'- caCCCUUg--GCGUCUUCUUCUGCuUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 93974 | 0.78 | 0.700807 |
Target: 5'- -cGGGAGggGCGGAGgcGAGGACGAGGCg -3' miRNA: 3'- caCCCUUggCGUCUU--CUUCUGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 173018 | 0.77 | 0.710863 |
Target: 5'- -gGGGAgcaGCCGCgAGAGGAGGAgGAAGa -3' miRNA: 3'- caCCCU---UGGCG-UCUUCUUCUgCUUCg -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 135796 | 0.77 | 0.710863 |
Target: 5'- -cGGGAggaggagcaGCgGCGGAGGGAGGCGcGGCg -3' miRNA: 3'- caCCCU---------UGgCGUCUUCUUCUGCuUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 214157 | 0.76 | 0.759946 |
Target: 5'- -aGGGAGCCGCGGAuggcuuGGucGACG-GGCa -3' miRNA: 3'- caCCCUUGGCGUCU------UCuuCUGCuUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 53222 | 0.76 | 0.769458 |
Target: 5'- -gGGGAGuCCGCGGgcGAAGcgaccgccgGCGAAGCc -3' miRNA: 3'- caCCCUU-GGCGUCuuCUUC---------UGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 129874 | 0.76 | 0.769458 |
Target: 5'- aGUGGGugacGGCCGgGGAGGAGgaggacgacGACGggGCg -3' miRNA: 3'- -CACCC----UUGGCgUCUUCUU---------CUGCuuCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 169588 | 0.76 | 0.782564 |
Target: 5'- cGUGGcGucugugcugucaguGCCGCGGuuguAGggGACGAGGCg -3' miRNA: 3'- -CACC-Cu-------------UGGCGUCu---UCuuCUGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 181159 | 0.76 | 0.797215 |
Target: 5'- cUGGGucuCCGUcuccAGAuAGAGGGCGAAGCg -3' miRNA: 3'- cACCCuu-GGCG----UCU-UCUUCUGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 214431 | 0.76 | 0.797215 |
Target: 5'- cGUGGGugacgguGCUGCAGAAGuuGAUGAcGGCg -3' miRNA: 3'- -CACCCu------UGGCGUCUUCuuCUGCU-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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