miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 3' -51.1 NC_003521.1 + 195354 0.76 0.797215
Target:  5'- gGUGGuGGGCCgGguGAAGGugacgcccgaGGACGAGGCg -3'
miRNA:   3'- -CACC-CUUGG-CguCUUCU----------UCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 89591 0.75 0.814983
Target:  5'- ----aGGCCGCGGAAGAAGAUGAAGa -3'
miRNA:   3'- cacccUUGGCGUCUUCUUCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 86696 0.75 0.832082
Target:  5'- cUGGcGGGCCGCGGcggcGAcGACGAGGCg -3'
miRNA:   3'- cACC-CUUGGCGUCuu--CUuCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 229235 0.75 0.835416
Target:  5'- aGUGGacccgcGGGCCGCGGAggugcuugcggugagGGAAGACGAaacAGCa -3'
miRNA:   3'- -CACC------CUUGGCGUCU---------------UCUUCUGCU---UCG- -5'
14167 3' -51.1 NC_003521.1 + 19099 0.75 0.84036
Target:  5'- -gGGGGA-CGgGGAGGGAGACGAcGCg -3'
miRNA:   3'- caCCCUUgGCgUCUUCUUCUGCUuCG- -5'
14167 3' -51.1 NC_003521.1 + 19930 0.75 0.84036
Target:  5'- cUGGacGCCGCAGcAGAAGGCgGAAGCc -3'
miRNA:   3'- cACCcuUGGCGUCuUCUUCUG-CUUCG- -5'
14167 3' -51.1 NC_003521.1 + 58977 0.75 0.84036
Target:  5'- cGUGGcGAaucaGCCGCuagaGGAGGggGACGAcgaaGGCu -3'
miRNA:   3'- -CACC-CU----UGGCG----UCUUCuuCUGCU----UCG- -5'
14167 3' -51.1 NC_003521.1 + 64945 0.74 0.856336
Target:  5'- --aGGAAUgGCAGGAGGAGGCcgaGAAGCu -3'
miRNA:   3'- cacCCUUGgCGUCUUCUUCUG---CUUCG- -5'
14167 3' -51.1 NC_003521.1 + 164805 0.74 0.861738
Target:  5'- -cGGGGAcgaucccggagcgcCCGCGGggGAGGAgGAaccGGCg -3'
miRNA:   3'- caCCCUU--------------GGCGUCuuCUUCUgCU---UCG- -5'
14167 3' -51.1 NC_003521.1 + 123461 0.74 0.864021
Target:  5'- -cGGGGACCGCGGGuu--GGCGAcuGGCc -3'
miRNA:   3'- caCCCUUGGCGUCUucuuCUGCU--UCG- -5'
14167 3' -51.1 NC_003521.1 + 43884 0.74 0.871495
Target:  5'- -gGGGAGacgaggCGguGAAGAAGGgGAGGCg -3'
miRNA:   3'- caCCCUUg-----GCguCUUCUUCUgCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 49614 0.74 0.871495
Target:  5'- cUGGGGA-CGCGGAGGAcacggcgacgaGGACGAGGg -3'
miRNA:   3'- cACCCUUgGCGUCUUCU-----------UCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 207045 0.74 0.871495
Target:  5'- gGUGGcuGGGCCGCAGGccGGAGGCGuuGCa -3'
miRNA:   3'- -CACC--CUUGGCGUCUu-CUUCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 17723 0.74 0.878037
Target:  5'- cGUGGGuGCCGgGGGAGAacccgucGGcCGAGGCc -3'
miRNA:   3'- -CACCCuUGGCgUCUUCU-------UCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 121049 0.74 0.878753
Target:  5'- -aGGuGGACCGCAGccuGGAGGCcGAGCa -3'
miRNA:   3'- caCC-CUUGGCGUCuu-CUUCUGcUUCG- -5'
14167 3' -51.1 NC_003521.1 + 98258 0.73 0.885789
Target:  5'- -cGcGGACCGCuAGAGGGAGACGAcauGCu -3'
miRNA:   3'- caCcCUUGGCG-UCUUCUUCUGCUu--CG- -5'
14167 3' -51.1 NC_003521.1 + 172872 0.73 0.885789
Target:  5'- -aGGccGAGCUGCAGGaggaGGAAGACGAGGa -3'
miRNA:   3'- caCC--CUUGGCGUCU----UCUUCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 100589 0.73 0.885789
Target:  5'- cGUaGGGGCCGguGGacgAGgcGGCGAAGCg -3'
miRNA:   3'- -CAcCCUUGGCguCU---UCuuCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 193177 0.73 0.892598
Target:  5'- --aGGAGCCgGCGGGAGc-GGCGGAGCg -3'
miRNA:   3'- cacCCUUGG-CGUCUUCuuCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 104085 0.73 0.892598
Target:  5'- -cGGGcGCgGCAGGacgcGGAAGGCGgcGCg -3'
miRNA:   3'- caCCCuUGgCGUCU----UCUUCUGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.