miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 3' -51.1 NC_003521.1 + 226883 0.66 0.998421
Target:  5'- -aGGGcAGCUGCGGggGcaccacGGCGGccAGCg -3'
miRNA:   3'- caCCC-UUGGCGUCuuCuu----CUGCU--UCG- -5'
14167 3' -51.1 NC_003521.1 + 38826 0.66 0.998392
Target:  5'- -cGcGGcGCCGUguuccgaGGAAGAgagccuggcugaGGACGAGGCa -3'
miRNA:   3'- caC-CCuUGGCG-------UCUUCU------------UCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 239053 0.66 0.998392
Target:  5'- -cGcGGcGCCGUguuccgaGGAAGAgagccuggcugaGGACGAGGCa -3'
miRNA:   3'- caC-CCuUGGCG-------UCUUCU------------UCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 115910 0.66 0.998114
Target:  5'- cUGGGucAGCuCGCGGuAGAGG-UGAGGCc -3'
miRNA:   3'- cACCC--UUG-GCGUCuUCUUCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 196954 0.66 0.998114
Target:  5'- cGUGGGcgacGGCC-CGGGAGccGGcCGggGCg -3'
miRNA:   3'- -CACCC----UUGGcGUCUUCuuCU-GCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 157049 0.66 0.998114
Target:  5'- -cGGaGGAgCGCGGcGGggGGCGccGCc -3'
miRNA:   3'- caCC-CUUgGCGUCuUCuuCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 180260 0.66 0.998114
Target:  5'- -cGGuGuACCGCAGggGGaaguAGGCGcgcacguuGAGCa -3'
miRNA:   3'- caCC-CuUGGCGUCuuCU----UCUGC--------UUCG- -5'
14167 3' -51.1 NC_003521.1 + 219683 0.66 0.998114
Target:  5'- -gGGGGGcCCGCGc----GGACGGAGCa -3'
miRNA:   3'- caCCCUU-GGCGUcuucuUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 213132 0.66 0.998114
Target:  5'- cGUGGuGcGGCCGCAGcgaacuGAAGACGuugguccaGGGCa -3'
miRNA:   3'- -CACC-C-UUGGCGUCuu----CUUCUGC--------UUCG- -5'
14167 3' -51.1 NC_003521.1 + 215803 0.66 0.998114
Target:  5'- -cGaGGAGCCGgAGGAaaAGGACGGcAGCg -3'
miRNA:   3'- caC-CCUUGGCgUCUUc-UUCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 215358 0.66 0.998114
Target:  5'- gGUGGGAcuucucGgCGCAGuagaggcAGAGGACGGccaggaagGGCa -3'
miRNA:   3'- -CACCCU------UgGCGUCu------UCUUCUGCU--------UCG- -5'
14167 3' -51.1 NC_003521.1 + 91502 0.66 0.998114
Target:  5'- aUGGGcACCaacaacagGCaauGGAGGuGGGCGGAGCg -3'
miRNA:   3'- cACCCuUGG--------CG---UCUUCuUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 24405 0.66 0.998114
Target:  5'- -cGGGc-CCGCGGAgcauAGAaagccAGACGgcGCa -3'
miRNA:   3'- caCCCuuGGCGUCU----UCU-----UCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 183025 0.66 0.997758
Target:  5'- cUGGGcgUCGUGGAAGAAcauGAUGAgaacGGCg -3'
miRNA:   3'- cACCCuuGGCGUCUUCUU---CUGCU----UCG- -5'
14167 3' -51.1 NC_003521.1 + 110315 0.66 0.997758
Target:  5'- -cGGGcAGCCGCAGGGccaucauGACGcGGCc -3'
miRNA:   3'- caCCC-UUGGCGUCUUcuu----CUGCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 19444 0.66 0.997758
Target:  5'- -cGGGAAgaCGaAGAGGAGGACGAcgAGg -3'
miRNA:   3'- caCCCUUg-GCgUCUUCUUCUGCU--UCg -5'
14167 3' -51.1 NC_003521.1 + 18084 0.66 0.997758
Target:  5'- cUGGaGAcgacgGCCGCGGGgacGGAGGAgGuAGCg -3'
miRNA:   3'- cACC-CU-----UGGCGUCU---UCUUCUgCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 65086 0.66 0.997758
Target:  5'- -aGGaGAACCGgcgccaGGAGGAAGAgCGgcGCc -3'
miRNA:   3'- caCC-CUUGGCg-----UCUUCUUCU-GCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 190939 0.66 0.997758
Target:  5'- -cGGGcGACgGUAGggGA-GACGAcggaugaugGGCa -3'
miRNA:   3'- caCCC-UUGgCGUCuuCUuCUGCU---------UCG- -5'
14167 3' -51.1 NC_003521.1 + 109707 0.66 0.997758
Target:  5'- -cGGGcgaaGGCCGagaGGAAGGAGGCcAGGUg -3'
miRNA:   3'- caCCC----UUGGCg--UCUUCUUCUGcUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.