miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 3' -51.1 NC_003521.1 + 43678 0.72 0.933672
Target:  5'- -gGaGGAGCagcaGCAGGAGGAGACGAc-- -3'
miRNA:   3'- caC-CCUUGg---CGUCUUCUUCUGCUucg -5'
14167 3' -51.1 NC_003521.1 + 207045 0.74 0.871495
Target:  5'- gGUGGcuGGGCCGCAGGccGGAGGCGuuGCa -3'
miRNA:   3'- -CACC--CUUGGCGUCUu-CUUCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 17723 0.74 0.878037
Target:  5'- cGUGGGuGCCGgGGGAGAacccgucGGcCGAGGCc -3'
miRNA:   3'- -CACCCuUGGCgUCUUCU-------UCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 98258 0.73 0.885789
Target:  5'- -cGcGGACCGCuAGAGGGAGACGAcauGCu -3'
miRNA:   3'- caCcCUUGGCG-UCUUCUUCUGCUu--CG- -5'
14167 3' -51.1 NC_003521.1 + 172872 0.73 0.885789
Target:  5'- -aGGccGAGCUGCAGGaggaGGAAGACGAGGa -3'
miRNA:   3'- caCC--CUUGGCGUCU----UCUUCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 100589 0.73 0.885789
Target:  5'- cGUaGGGGCCGguGGacgAGgcGGCGAAGCg -3'
miRNA:   3'- -CAcCCUUGGCguCU---UCuuCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 86585 0.73 0.899178
Target:  5'- -aGGGcacGCCGCAGccGggGAaGAAGCg -3'
miRNA:   3'- caCCCu--UGGCGUCuuCuuCUgCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 102693 0.72 0.917503
Target:  5'- -gGGGAacauGCUGCGGugccaggucucgGAGAAGACGgcGCa -3'
miRNA:   3'- caCCCU----UGGCGUC------------UUCUUCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 87370 0.72 0.928524
Target:  5'- -aGGaGGCCGaGGuGGAGGACGAGGCg -3'
miRNA:   3'- caCCcUUGGCgUCuUCUUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 164805 0.74 0.861738
Target:  5'- -cGGGGAcgaucccggagcgcCCGCGGggGAGGAgGAaccGGCg -3'
miRNA:   3'- caCCCUU--------------GGCGUCuuCUUCUgCU---UCG- -5'
14167 3' -51.1 NC_003521.1 + 64945 0.74 0.856336
Target:  5'- --aGGAAUgGCAGGAGGAGGCcgaGAAGCu -3'
miRNA:   3'- cacCCUUGgCGUCUUCUUCUG---CUUCG- -5'
14167 3' -51.1 NC_003521.1 + 19930 0.75 0.84036
Target:  5'- cUGGacGCCGCAGcAGAAGGCgGAAGCc -3'
miRNA:   3'- cACCcuUGGCGUCuUCUUCUG-CUUCG- -5'
14167 3' -51.1 NC_003521.1 + 40870 0.8 0.567927
Target:  5'- -cGGuGAGCCGCGGAGGGaagGGAcCGggGCg -3'
miRNA:   3'- caCC-CUUGGCGUCUUCU---UCU-GCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 210639 0.8 0.598493
Target:  5'- --aGGAACCGCAGAAGAuccccacauAGACGcgGAGCa -3'
miRNA:   3'- cacCCUUGGCGUCUUCU---------UCUGC--UUCG- -5'
14167 3' -51.1 NC_003521.1 + 173018 0.77 0.710863
Target:  5'- -gGGGAgcaGCCGCgAGAGGAGGAgGAAGa -3'
miRNA:   3'- caCCCU---UGGCG-UCUUCUUCUgCUUCg -5'
14167 3' -51.1 NC_003521.1 + 135796 0.77 0.710863
Target:  5'- -cGGGAggaggagcaGCgGCGGAGGGAGGCGcGGCg -3'
miRNA:   3'- caCCCU---------UGgCGUCUUCUUCUGCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 214157 0.76 0.759946
Target:  5'- -aGGGAGCCGCGGAuggcuuGGucGACG-GGCa -3'
miRNA:   3'- caCCCUUGGCGUCU------UCuuCUGCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 129874 0.76 0.769458
Target:  5'- aGUGGGugacGGCCGgGGAGGAGgaggacgacGACGggGCg -3'
miRNA:   3'- -CACCC----UUGGCgUCUUCUU---------CUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 214431 0.76 0.797215
Target:  5'- cGUGGGugacgguGCUGCAGAAGuuGAUGAcGGCg -3'
miRNA:   3'- -CACCCu------UGGCGUCUUCuuCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 181159 0.76 0.797215
Target:  5'- cUGGGucuCCGUcuccAGAuAGAGGGCGAAGCg -3'
miRNA:   3'- cACCCuu-GGCG----UCU-UCUUCUGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.