miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 3' -51.1 NC_003521.1 + 19444 0.66 0.997758
Target:  5'- -cGGGAAgaCGaAGAGGAGGACGAcgAGg -3'
miRNA:   3'- caCCCUUg-GCgUCUUCUUCUGCU--UCg -5'
14167 3' -51.1 NC_003521.1 + 215358 0.66 0.998114
Target:  5'- gGUGGGAcuucucGgCGCAGuagaggcAGAGGACGGccaggaagGGCa -3'
miRNA:   3'- -CACCCU------UgGCGUCu------UCUUCUGCU--------UCG- -5'
14167 3' -51.1 NC_003521.1 + 190939 0.66 0.997758
Target:  5'- -cGGGcGACgGUAGggGA-GACGAcggaugaugGGCa -3'
miRNA:   3'- caCCC-UUGgCGUCuuCUuCUGCU---------UCG- -5'
14167 3' -51.1 NC_003521.1 + 238449 0.66 0.997348
Target:  5'- --aGGAGgCGCAGGgcggccucGGcGGGCGggGCg -3'
miRNA:   3'- cacCCUUgGCGUCU--------UCuUCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 87058 0.66 0.997348
Target:  5'- -aGGaGAGCaGCGGGuGGAAGGCGGcGGCg -3'
miRNA:   3'- caCC-CUUGgCGUCU-UCUUCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 65086 0.66 0.997758
Target:  5'- -aGGaGAACCGgcgccaGGAGGAAGAgCGgcGCc -3'
miRNA:   3'- caCC-CUUGGCg-----UCUUCUUCU-GCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 60516 0.66 0.997348
Target:  5'- -cGGGAggaGCUGCAcGGcaucuGGGAGACGguGCu -3'
miRNA:   3'- caCCCU---UGGCGU-CU-----UCUUCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 74126 0.66 0.997348
Target:  5'- aUGGGcGCCGUgcAGGAcGACGuGGCg -3'
miRNA:   3'- cACCCuUGGCGucUUCUuCUGCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 157282 0.66 0.997348
Target:  5'- -cGGGGcaacggcgGCCGCguacGGggGGAGGCGGGa- -3'
miRNA:   3'- caCCCU--------UGGCG----UCuuCUUCUGCUUcg -5'
14167 3' -51.1 NC_003521.1 + 150533 0.66 0.997348
Target:  5'- -cGGGAGCCGUGGGguccGGcGGugGuGGUg -3'
miRNA:   3'- caCCCUUGGCGUCU----UCuUCugCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 24405 0.66 0.998114
Target:  5'- -cGGGc-CCGCGGAgcauAGAaagccAGACGgcGCa -3'
miRNA:   3'- caCCCuuGGCGUCU----UCU-----UCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 18084 0.66 0.997758
Target:  5'- cUGGaGAcgacgGCCGCGGGgacGGAGGAgGuAGCg -3'
miRNA:   3'- cACC-CU-----UGGCGUCU---UCUUCUgCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 197524 0.66 0.997348
Target:  5'- -gGGGAACgGUugucGAGGAgucggcGGACGAgAGCg -3'
miRNA:   3'- caCCCUUGgCGu---CUUCU------UCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 71830 0.66 0.997348
Target:  5'- -aGGGAgacggcgcaGCCGguGuucuuAAGAUGAAGCa -3'
miRNA:   3'- caCCCU---------UGGCguCuuc--UUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 57640 0.66 0.997348
Target:  5'- -cGGGGGCCGaaacgGGAcgGGAcGGCGAAGa -3'
miRNA:   3'- caCCCUUGGCg----UCU--UCUuCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 109707 0.66 0.997758
Target:  5'- -cGGGcgaaGGCCGagaGGAAGGAGGCcAGGUg -3'
miRNA:   3'- caCCC----UUGGCg--UCUUCUUCUGcUUCG- -5'
14167 3' -51.1 NC_003521.1 + 91502 0.66 0.998114
Target:  5'- aUGGGcACCaacaacagGCaauGGAGGuGGGCGGAGCg -3'
miRNA:   3'- cACCCuUGG--------CG---UCUUCuUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 67011 0.66 0.998779
Target:  5'- -gGGGAggugcaccacgccgaGCUGguGGAGGucaaGGACGAGGa -3'
miRNA:   3'- caCCCU---------------UGGCguCUUCU----UCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 115910 0.66 0.998114
Target:  5'- cUGGGucAGCuCGCGGuAGAGG-UGAGGCc -3'
miRNA:   3'- cACCC--UUG-GCGUCuUCUUCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 213075 0.66 0.997303
Target:  5'- -cGGcGGACgGCaaguuuuauauagAGGAGGAGACGcGGCu -3'
miRNA:   3'- caCC-CUUGgCG-------------UCUUCUUCUGCuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.