miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 3' -51.1 NC_003521.1 + 99487 1.14 0.007037
Target:  5'- cGUGGGAACCGCAGAAGAAGACGAAGCa -3'
miRNA:   3'- -CACCCUUGGCGUCUUCUUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 123461 0.74 0.864021
Target:  5'- -cGGGGACCGCGGGuu--GGCGAcuGGCc -3'
miRNA:   3'- caCCCUUGGCGUCUucuuCUGCU--UCG- -5'
14167 3' -51.1 NC_003521.1 + 43884 0.74 0.871495
Target:  5'- -gGGGAGacgaggCGguGAAGAAGGgGAGGCg -3'
miRNA:   3'- caCCCUUg-----GCguCUUCUUCUgCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 67011 0.66 0.998779
Target:  5'- -gGGGAggugcaccacgccgaGCUGguGGAGGucaaGGACGAGGa -3'
miRNA:   3'- caCCCU---------------UGGCguCUUCU----UCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 91270 0.8 0.567927
Target:  5'- -cGGGaAACCGgGGAAGAAGAaGGAGCg -3'
miRNA:   3'- caCCC-UUGGCgUCUUCUUCUgCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 22162 0.79 0.649832
Target:  5'- -cGGGAGaCGguGGAGAgGGACGAGGCg -3'
miRNA:   3'- caCCCUUgGCguCUUCU-UCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 124109 0.78 0.670325
Target:  5'- -cGGGAccGCCGUGGAAGuGGACGgcGCu -3'
miRNA:   3'- caCCCU--UGGCGUCUUCuUCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 93974 0.78 0.700807
Target:  5'- -cGGGAGggGCGGAGgcGAGGACGAGGCg -3'
miRNA:   3'- caCCCUUggCGUCUU--CUUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 195354 0.76 0.797215
Target:  5'- gGUGGuGGGCCgGguGAAGGugacgcccgaGGACGAGGCg -3'
miRNA:   3'- -CACC-CUUGG-CguCUUCU----------UCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 58977 0.75 0.84036
Target:  5'- cGUGGcGAaucaGCCGCuagaGGAGGggGACGAcgaaGGCu -3'
miRNA:   3'- -CACC-CU----UGGCG----UCUUCuuCUGCU----UCG- -5'
14167 3' -51.1 NC_003521.1 + 86696 0.75 0.832082
Target:  5'- cUGGcGGGCCGCGGcggcGAcGACGAGGCg -3'
miRNA:   3'- cACC-CUUGGCGUCuu--CUuCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 169588 0.76 0.782564
Target:  5'- cGUGGcGucugugcugucaguGCCGCGGuuguAGggGACGAGGCg -3'
miRNA:   3'- -CACC-Cu-------------UGGCGUCu---UCuuCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 15852 0.85 0.326094
Target:  5'- gGUGGGcGACCGCuacGAGGAGACGGAGCu -3'
miRNA:   3'- -CACCC-UUGGCGuc-UUCUUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 229235 0.75 0.835416
Target:  5'- aGUGGacccgcGGGCCGCGGAggugcuugcggugagGGAAGACGAaacAGCa -3'
miRNA:   3'- -CACC------CUUGGCGUCU---------------UCUUCUGCU---UCG- -5'
14167 3' -51.1 NC_003521.1 + 168084 0.83 0.415304
Target:  5'- -gGGGGGCUGCAGAGGucGGCGAAGa -3'
miRNA:   3'- caCCCUUGGCGUCUUCuuCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 53222 0.76 0.769458
Target:  5'- -gGGGAGuCCGCGGgcGAAGcgaccgccgGCGAAGCc -3'
miRNA:   3'- caCCCUU-GGCGUCuuCUUC---------UGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 19099 0.75 0.84036
Target:  5'- -gGGGGA-CGgGGAGGGAGACGAcGCg -3'
miRNA:   3'- caCCCUUgGCgUCUUCUUCUGCUuCG- -5'
14167 3' -51.1 NC_003521.1 + 49614 0.74 0.871495
Target:  5'- cUGGGGA-CGCGGAGGAcacggcgacgaGGACGAGGg -3'
miRNA:   3'- cACCCUUgGCGUCUUCU-----------UCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 103719 0.81 0.508181
Target:  5'- --cGGAACCuaGCAGAGGAugGGACGGAGCa -3'
miRNA:   3'- cacCCUUGG--CGUCUUCU--UCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 92298 0.78 0.670325
Target:  5'- -cGGGGAaggCGCGGGAGGAGGCGcAGCc -3'
miRNA:   3'- caCCCUUg--GCGUCUUCUUCUGCuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.