miRNA display CGI


Results 1 - 20 of 261 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 3' -51.1 NC_003521.1 + 240820 0.68 0.988737
Target:  5'- -cGGGAcCCGCAGcGGAGGcCGGAu- -3'
miRNA:   3'- caCCCUuGGCGUCuUCUUCuGCUUcg -5'
14167 3' -51.1 NC_003521.1 + 239053 0.66 0.998392
Target:  5'- -cGcGGcGCCGUguuccgaGGAAGAgagccuggcugaGGACGAGGCa -3'
miRNA:   3'- caC-CCuUGGCG-------UCUUCU------------UCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 238567 0.69 0.981901
Target:  5'- cUGGGGGCaGUAGccGAAGACGGcacccAGCu -3'
miRNA:   3'- cACCCUUGgCGUCuuCUUCUGCU-----UCG- -5'
14167 3' -51.1 NC_003521.1 + 238449 0.66 0.997348
Target:  5'- --aGGAGgCGCAGGgcggccucGGcGGGCGggGCg -3'
miRNA:   3'- cacCCUUgGCGUCU--------UCuUCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 237162 0.68 0.991297
Target:  5'- -aGGGucccGGCCGCcGAGGcAGACGGcGGCg -3'
miRNA:   3'- caCCC----UUGGCGuCUUCuUCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 236332 0.69 0.981901
Target:  5'- -cGGGGcCCGgaCGGggGAGGACGAuaaaagaucgggGGCc -3'
miRNA:   3'- caCCCUuGGC--GUCuuCUUCUGCU------------UCG- -5'
14167 3' -51.1 NC_003521.1 + 236188 0.69 0.979785
Target:  5'- gGUGGGGug-GCAGGaaAGccGACGGAGCg -3'
miRNA:   3'- -CACCCUuggCGUCU--UCuuCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 235584 0.7 0.97343
Target:  5'- -cGGGAcgUGCGGGAGGacgagaggcggacucGGGCGGAGCc -3'
miRNA:   3'- caCCCUugGCGUCUUCU---------------UCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 233432 0.71 0.947246
Target:  5'- cGUGGGuuuguGGCCggGCAGGgcguaacguacccAGGAGACGGAGUg -3'
miRNA:   3'- -CACCC-----UUGG--CGUCU-------------UCUUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 232565 0.67 0.994252
Target:  5'- -cGGGGGCUGCugugugguGAgcGGggGGCGAcauGCg -3'
miRNA:   3'- caCCCUUGGCGu-------CU--UCuuCUGCUu--CG- -5'
14167 3' -51.1 NC_003521.1 + 229235 0.75 0.835416
Target:  5'- aGUGGacccgcGGGCCGCGGAggugcuugcggugagGGAAGACGAaacAGCa -3'
miRNA:   3'- -CACC------CUUGGCGUCU---------------UCUUCUGCU---UCG- -5'
14167 3' -51.1 NC_003521.1 + 229102 0.69 0.979785
Target:  5'- cGUGGuaGAACUGCucGAAGAggccGGACGAGGa -3'
miRNA:   3'- -CACC--CUUGGCGu-CUUCU----UCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 227572 0.66 0.998685
Target:  5'- ---aGAACgGCAGGuaGGAGGACGGaugaGGCa -3'
miRNA:   3'- caccCUUGgCGUCU--UCUUCUGCU----UCG- -5'
14167 3' -51.1 NC_003521.1 + 226883 0.66 0.998421
Target:  5'- -aGGGcAGCUGCGGggGcaccacGGCGGccAGCg -3'
miRNA:   3'- caCCC-UUGGCGUCuuCuu----CUGCU--UCG- -5'
14167 3' -51.1 NC_003521.1 + 223922 0.69 0.981901
Target:  5'- gGUGauuGGAGgCGCGGccGAGggGGuCGAGGCg -3'
miRNA:   3'- -CAC---CCUUgGCGUC--UUCuuCU-GCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 222776 0.69 0.987255
Target:  5'- gGUGGGGucGgCGCAGAGGAAcuucugcacGugGuAGCg -3'
miRNA:   3'- -CACCCU--UgGCGUCUUCUU---------CugCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 219683 0.66 0.998114
Target:  5'- -gGGGGGcCCGCGc----GGACGGAGCa -3'
miRNA:   3'- caCCCUU-GGCGUcuucuUCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 218691 0.66 0.998421
Target:  5'- -aGGGcGGCgGCGaaggcGGAGGAGACGGcGGCg -3'
miRNA:   3'- caCCC-UUGgCGU-----CUUCUUCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 218245 0.69 0.979785
Target:  5'- gGUaGGAcagGCCGguGcAGAGGACGAAGa -3'
miRNA:   3'- -CAcCCU---UGGCguCuUCUUCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 216892 0.67 0.996877
Target:  5'- -aGGGucgUCGCAGGugaGGAGGGCGcgguGGCa -3'
miRNA:   3'- caCCCuu-GGCGUCU---UCUUCUGCu---UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.