miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 3' -51.9 NC_003521.1 + 220415 0.71 0.914424
Target:  5'- cGAAGGUgaagGCCAGCUGaaagacGAGCACGg -3'
miRNA:   3'- uCUUCUAga--CGGUCGACga----CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 213769 0.66 0.995498
Target:  5'- uAGAAGAUg-GCCAGC-GCguaGACGCGc -3'
miRNA:   3'- -UCUUCUAgaCGGUCGaCGac-UUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 211224 0.66 0.996141
Target:  5'- uGAAGGUCUugGUCAGCagGCUGuugggaauACACa -3'
miRNA:   3'- uCUUCUAGA--CGGUCGa-CGACu-------UGUGc -5'
14179 3' -51.9 NC_003521.1 + 206113 0.69 0.961488
Target:  5'- aGGGAGGcCgGUCAGCUGCU--GCGCGa -3'
miRNA:   3'- -UCUUCUaGaCGGUCGACGAcuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 199577 0.7 0.949876
Target:  5'- cGAGGccacguucGUCcccagcagUGCUGGUUGCUGAGCACGa -3'
miRNA:   3'- uCUUC--------UAG--------ACGGUCGACGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 198742 0.66 0.993029
Target:  5'- cAGAcgAGGUCuUGCCGuGCUcGCUGGuCGCGc -3'
miRNA:   3'- -UCU--UCUAG-ACGGU-CGA-CGACUuGUGC- -5'
14179 3' -51.9 NC_003521.1 + 196443 0.69 0.968103
Target:  5'- --cGGGUCgGCCGGCUGCc--GCGCGa -3'
miRNA:   3'- ucuUCUAGaCGGUCGACGacuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 195681 0.7 0.949876
Target:  5'- uAGAAGAUCUGCgGGaugucCUGCcgGuGCACGa -3'
miRNA:   3'- -UCUUCUAGACGgUC-----GACGa-CuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 193159 0.71 0.908386
Target:  5'- cGGggGcGUCUGCU-GCUGCUGuuGCGCa -3'
miRNA:   3'- -UCuuC-UAGACGGuCGACGACu-UGUGc -5'
14179 3' -51.9 NC_003521.1 + 187062 0.7 0.94096
Target:  5'- gGGAAGGg-UGCCAGCgaGCggaGGGCGCGg -3'
miRNA:   3'- -UCUUCUagACGGUCGa-CGa--CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 179592 0.68 0.984928
Target:  5'- uGAAGuucugcaggCUGCC-GCUGCUGcuGCGCGu -3'
miRNA:   3'- uCUUCua-------GACGGuCGACGACu-UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 168526 0.67 0.988176
Target:  5'- ---cGAUCUGCU-GCUGCccucgcUGGACGCGc -3'
miRNA:   3'- ucuuCUAGACGGuCGACG------ACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 168513 0.67 0.988176
Target:  5'- cGGAGGAcggCgacGCCAGCagGCUGGcggccaGCGCGg -3'
miRNA:   3'- -UCUUCUa--Ga--CGGUCGa-CGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 167359 0.72 0.874646
Target:  5'- aAGAcGAUCga-CAGCUGCUGggUACa -3'
miRNA:   3'- -UCUuCUAGacgGUCGACGACuuGUGc -5'
14179 3' -51.9 NC_003521.1 + 162587 0.68 0.978836
Target:  5'- -----cUCUGCCGGCUGCgguGGCACu -3'
miRNA:   3'- ucuucuAGACGGUCGACGac-UUGUGc -5'
14179 3' -51.9 NC_003521.1 + 161888 0.67 0.992
Target:  5'- cAGaAAGAUCgGCgAGUaccUGCUGgAGCGCGg -3'
miRNA:   3'- -UC-UUCUAGaCGgUCG---ACGAC-UUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 156139 0.7 0.94096
Target:  5'- uGGAGGUgUGCacgCAGCUGCUG-GCGCu -3'
miRNA:   3'- uCUUCUAgACG---GUCGACGACuUGUGc -5'
14179 3' -51.9 NC_003521.1 + 155391 0.66 0.99477
Target:  5'- cGGAcGA-CgagGCCGGCgggggGCUGGGCACc -3'
miRNA:   3'- -UCUuCUaGa--CGGUCGa----CGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 148450 0.68 0.98104
Target:  5'- cAGggGug--GCCGGUgcgUGCUGAugACGa -3'
miRNA:   3'- -UCuuCuagaCGGUCG---ACGACUugUGC- -5'
14179 3' -51.9 NC_003521.1 + 145135 0.68 0.983068
Target:  5'- uGGAGcUCUuUCAGCUGCUGGagaaggagucGCGCGg -3'
miRNA:   3'- uCUUCuAGAcGGUCGACGACU----------UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.