miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 3' -51.9 NC_003521.1 + 87475 1.09 0.009872
Target:  5'- cAGAAGAUCUGCCAGCUGCUGAACACGu -3'
miRNA:   3'- -UCUUCUAGACGGUCGACGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 29690 0.67 0.987265
Target:  5'- uGGAGGAugauccgcugcguccUCggcGCCuGGCUGCUGAgccucgGCGCGa -3'
miRNA:   3'- -UCUUCU---------------AGa--CGG-UCGACGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 168526 0.67 0.988176
Target:  5'- ---cGAUCUGCU-GCUGCccucgcUGGACGCGc -3'
miRNA:   3'- ucuuCUAGACGGuCGACG------ACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 211224 0.66 0.996141
Target:  5'- uGAAGGUCUugGUCAGCagGCUGuugggaauACACa -3'
miRNA:   3'- uCUUCUAGA--CGGUCGa-CGACu-------UGUGc -5'
14179 3' -51.9 NC_003521.1 + 187062 0.7 0.94096
Target:  5'- gGGAAGGg-UGCCAGCgaGCggaGGGCGCGg -3'
miRNA:   3'- -UCUUCUagACGGUCGa-CGa--CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 195681 0.7 0.949876
Target:  5'- uAGAAGAUCUGCgGGaugucCUGCcgGuGCACGa -3'
miRNA:   3'- -UCUUCUAGACGgUC-----GACGa-CuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 116062 0.7 0.949876
Target:  5'- cAGGAGAUCaaCCagcGGCUGCUGAuCAUGg -3'
miRNA:   3'- -UCUUCUAGacGG---UCGACGACUuGUGC- -5'
14179 3' -51.9 NC_003521.1 + 71138 0.7 0.953978
Target:  5'- --cAGAUCcGCguGCUGCUGAagaaucACACGc -3'
miRNA:   3'- ucuUCUAGaCGguCGACGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 76277 0.68 0.976199
Target:  5'- aGGAAGAgucgCUGCC-GCUGCUGcgaguccggguccGGCAgCGg -3'
miRNA:   3'- -UCUUCUa---GACGGuCGACGAC-------------UUGU-GC- -5'
14179 3' -51.9 NC_003521.1 + 74635 0.67 0.986627
Target:  5'- aAGGAGuUCUGCCuGCgucacggGCUGAACc-- -3'
miRNA:   3'- -UCUUCuAGACGGuCGa------CGACUUGugc -5'
14179 3' -51.9 NC_003521.1 + 110446 0.68 0.98104
Target:  5'- aAGAA-AUC-GCCGGUggcGCUGAGCGCGc -3'
miRNA:   3'- -UCUUcUAGaCGGUCGa--CGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 98818 0.69 0.968103
Target:  5'- cGAGGcgUUG-CAGCUGCUuGGCGCGg -3'
miRNA:   3'- uCUUCuaGACgGUCGACGAcUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 8035 0.73 0.85171
Target:  5'- cGGAGGcgUUGagaaCCAGCUGCUGAGgGCa -3'
miRNA:   3'- -UCUUCuaGAC----GGUCGACGACUUgUGc -5'
14179 3' -51.9 NC_003521.1 + 179592 0.68 0.984928
Target:  5'- uGAAGuucugcaggCUGCC-GCUGCUGcuGCGCGu -3'
miRNA:   3'- uCUUCua-------GACGGuCGACGACu-UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 137171 0.71 0.908386
Target:  5'- cGGAGg---GCCAgguGCUGCUGAGCAUGg -3'
miRNA:   3'- uCUUCuagaCGGU---CGACGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 48424 0.69 0.964905
Target:  5'- cGAGGcgCUggaacagcaccGUCAGCUGCUGAAguCGCGu -3'
miRNA:   3'- uCUUCuaGA-----------CGGUCGACGACUU--GUGC- -5'
14179 3' -51.9 NC_003521.1 + 44716 0.67 0.986627
Target:  5'- cGGcGGAUCUauaccgcgcGCCGcauuucguGCUGCUGGACGCc -3'
miRNA:   3'- -UCuUCUAGA---------CGGU--------CGACGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 108818 0.67 0.987265
Target:  5'- aGGAacgGGAUCUgguacgaauugcgcaGCucCAGCUGCgUGAACACGc -3'
miRNA:   3'- -UCU---UCUAGA---------------CG--GUCGACG-ACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 156139 0.7 0.94096
Target:  5'- uGGAGGUgUGCacgCAGCUGCUG-GCGCu -3'
miRNA:   3'- uCUUCUAgACG---GUCGACGACuUGUGc -5'
14179 3' -51.9 NC_003521.1 + 199577 0.7 0.949876
Target:  5'- cGAGGccacguucGUCcccagcagUGCUGGUUGCUGAGCACGa -3'
miRNA:   3'- uCUUC--------UAG--------ACGGUCGACGACUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.