miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 5' -58.5 NC_003521.1 + 159821 0.66 0.893082
Target:  5'- -aCGgaccGGCCGUGAGgCgcugcgcggaGGCGCGAGCg -3'
miRNA:   3'- cgGCa---CUGGUACUCgG----------CCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 84346 0.66 0.879965
Target:  5'- aGCa-UGcCCAcgaagGAGCCGGUcuGCGAGCUg -3'
miRNA:   3'- -CGgcACuGGUa----CUCGGCCG--UGCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 59754 0.66 0.877927
Target:  5'- gGCCG-GACCugGUGAGCagcuucgugaucagCGGUaacgGCGAGCg -3'
miRNA:   3'- -CGGCaCUGG--UACUCG--------------GCCG----UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 148438 0.66 0.893082
Target:  5'- cGCCGgcGGCUccagggGUG-GCCGGUGCGuGCUg -3'
miRNA:   3'- -CGGCa-CUGG------UACuCGGCCGUGCuCGA- -5'
14179 5' -58.5 NC_003521.1 + 54839 0.66 0.879965
Target:  5'- gGCUGgaagGACUugucgGUGAuGUagaGGCACGAGCUg -3'
miRNA:   3'- -CGGCa---CUGG-----UACU-CGg--CCGUGCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 59419 0.66 0.904772
Target:  5'- uUCGUGGCaCGcGAcagcggcgccgccGCCGGCAgCGAGCUc -3'
miRNA:   3'- cGGCACUG-GUaCU-------------CGGCCGU-GCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 223784 0.66 0.886626
Target:  5'- cGCCGUuaccGCCGUGGGCCGcCagacgACGGGCc -3'
miRNA:   3'- -CGGCAc---UGGUACUCGGCcG-----UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 105943 0.66 0.899329
Target:  5'- gGCCGgcgcggaugaUGACCGUGuGUCGGgUGCGcAGCg -3'
miRNA:   3'- -CGGC----------ACUGGUACuCGGCC-GUGC-UCGa -5'
14179 5' -58.5 NC_003521.1 + 192764 0.66 0.899329
Target:  5'- gGCCGU--CCAUcAGCucgaucuccacCGGCACGGGCUu -3'
miRNA:   3'- -CGGCAcuGGUAcUCG-----------GCCGUGCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 112110 0.66 0.905366
Target:  5'- cGgCGUGAUgGUGAGCaCGGCcaACGugauGCa -3'
miRNA:   3'- -CgGCACUGgUACUCG-GCCG--UGCu---CGa -5'
14179 5' -58.5 NC_003521.1 + 238204 0.66 0.879287
Target:  5'- aGUCGaGGCCAaGAGCCugggcgucggcacGGCGuCGAGCg -3'
miRNA:   3'- -CGGCaCUGGUaCUCGG-------------CCGU-GCUCGa -5'
14179 5' -58.5 NC_003521.1 + 118697 0.66 0.877927
Target:  5'- cGCUGguggagggcaGGCuCAUGGGCgaggggcgcggcacCGGCACGGGCUg -3'
miRNA:   3'- -CGGCa---------CUG-GUACUCG--------------GCCGUGCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 51119 0.66 0.893082
Target:  5'- aGCCGggagGGCUgguUGAGaCaGCACGAGCg -3'
miRNA:   3'- -CGGCa---CUGGu--ACUCgGcCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 186544 0.66 0.893082
Target:  5'- uCCGUGGgaGgcaGGGCCGGCACGAaCUu -3'
miRNA:   3'- cGGCACUggUa--CUCGGCCGUGCUcGA- -5'
14179 5' -58.5 NC_003521.1 + 211398 0.66 0.899329
Target:  5'- cGCCGgcucucGugCAgcAGCCGGCgcacaucgugaaACGAGCUc -3'
miRNA:   3'- -CGGCa-----CugGUacUCGGCCG------------UGCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 198026 0.66 0.886626
Target:  5'- aCCGUGGCCGcu-GCCGaGCGUGAGUa -3'
miRNA:   3'- cGGCACUGGUacuCGGC-CGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 130742 0.66 0.879965
Target:  5'- aGUCGgGA-CGUGucGGCgGGCGCGAGCg -3'
miRNA:   3'- -CGGCaCUgGUAC--UCGgCCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 73740 0.66 0.879965
Target:  5'- uUCGUGcaGCUgcucuucuacauGUGGGCCGGCACcGGCg -3'
miRNA:   3'- cGGCAC--UGG------------UACUCGGCCGUGcUCGa -5'
14179 5' -58.5 NC_003521.1 + 145959 0.66 0.879965
Target:  5'- uGCUG-GGCCGccucaacaucuaUGAGCUGGCGCGcuucccgcugccGGCUu -3'
miRNA:   3'- -CGGCaCUGGU------------ACUCGGCCGUGC------------UCGA- -5'
14179 5' -58.5 NC_003521.1 + 149970 0.66 0.879965
Target:  5'- gGCCGUGGUCAgcAGCa-GCACGGGCg -3'
miRNA:   3'- -CGGCACUGGUacUCGgcCGUGCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.