miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 5' -58.5 NC_003521.1 + 127800 0.69 0.759015
Target:  5'- cGCaCGUGcuCCAUGAucuGCCaGGCGCGcAGCUc -3'
miRNA:   3'- -CG-GCACu-GGUACU---CGG-CCGUGC-UCGA- -5'
14179 5' -58.5 NC_003521.1 + 12922 0.7 0.683518
Target:  5'- cGCUGguggcggGACCA-GGGCCGGgAgGAGCa -3'
miRNA:   3'- -CGGCa------CUGGUaCUCGGCCgUgCUCGa -5'
14179 5' -58.5 NC_003521.1 + 154656 0.7 0.683518
Target:  5'- uGCCGcUGGCCGa-GGCCGGCAgCGAGaCg -3'
miRNA:   3'- -CGGC-ACUGGUacUCGGCCGU-GCUC-Ga -5'
14179 5' -58.5 NC_003521.1 + 19155 0.7 0.702782
Target:  5'- cGUgGUGACCGaGAGCaCGGCGCuGGUg -3'
miRNA:   3'- -CGgCACUGGUaCUCG-GCCGUGcUCGa -5'
14179 5' -58.5 NC_003521.1 + 193285 0.7 0.712337
Target:  5'- uGCCGgGACgGgcgucgGAGUCGGCGCGGGg- -3'
miRNA:   3'- -CGGCaCUGgUa-----CUCGGCCGUGCUCga -5'
14179 5' -58.5 NC_003521.1 + 100203 0.7 0.721829
Target:  5'- gGCCGUGuACCGcUGcaggucguaGGCCGGCGaggugGAGCUg -3'
miRNA:   3'- -CGGCAC-UGGU-AC---------UCGGCCGUg----CUCGA- -5'
14179 5' -58.5 NC_003521.1 + 140032 0.69 0.734998
Target:  5'- gGCCGcagaaGGCCAUGAGCgGcaggaaggccucguuGCACGAGUg -3'
miRNA:   3'- -CGGCa----CUGGUACUCGgC---------------CGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 85229 0.69 0.740595
Target:  5'- cGCCGgacagaGACaugGGGCCGGCGCGcaaauaacuGGCUa -3'
miRNA:   3'- -CGGCa-----CUGguaCUCGGCCGUGC---------UCGA- -5'
14179 5' -58.5 NC_003521.1 + 191075 0.69 0.749852
Target:  5'- cGCgGcGACCGUGGuGgCGGCGgCGGGCUg -3'
miRNA:   3'- -CGgCaCUGGUACU-CgGCCGU-GCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 149402 0.7 0.673823
Target:  5'- uUCGUGGCCGUG-GCCGucacGgACGAGCa -3'
miRNA:   3'- cGGCACUGGUACuCGGC----CgUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 213025 0.71 0.654349
Target:  5'- cGCCG-GGC---GAGCCGGC-CGAGCg -3'
miRNA:   3'- -CGGCaCUGguaCUCGGCCGuGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 71790 0.71 0.63481
Target:  5'- cGCCGaGACCAgcuUGA-CCGGCGCGcGCa -3'
miRNA:   3'- -CGGCaCUGGU---ACUcGGCCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 150728 0.78 0.296492
Target:  5'- gGCCGUgGGCCAcguccUGGGCCGGCugcccggacugcuccGCGAGCg -3'
miRNA:   3'- -CGGCA-CUGGU-----ACUCGGCCG---------------UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 138697 0.78 0.300458
Target:  5'- gGCCGUGAgCC-UGGG-CGGCACGGGCg -3'
miRNA:   3'- -CGGCACU-GGuACUCgGCCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 115370 0.77 0.34236
Target:  5'- cGUCGcUGGCCA-GGGCCGGCAUGuGCa -3'
miRNA:   3'- -CGGC-ACUGGUaCUCGGCCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 45295 0.76 0.357234
Target:  5'- cGCCGcugGGCCAgGAGCCGGagccCGAGCUg -3'
miRNA:   3'- -CGGCa--CUGGUaCUCGGCCgu--GCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 36816 0.74 0.472428
Target:  5'- gGCCGUGaucacgcGCCAcGGGCCGGCGCu-GCUg -3'
miRNA:   3'- -CGGCAC-------UGGUaCUCGGCCGUGcuCGA- -5'
14179 5' -58.5 NC_003521.1 + 148891 0.73 0.518256
Target:  5'- gGCCGUGGCCGacgccgagGAGCgccgccgCGGCAuCGAGCa -3'
miRNA:   3'- -CGGCACUGGUa-------CUCG-------GCCGU-GCUCGa -5'
14179 5' -58.5 NC_003521.1 + 37416 0.73 0.519192
Target:  5'- gGCC-UGACCGUGuGGCgCGGCGcCGAGCc -3'
miRNA:   3'- -CGGcACUGGUAC-UCG-GCCGU-GCUCGa -5'
14179 5' -58.5 NC_003521.1 + 60691 0.73 0.519192
Target:  5'- gGCCGcgcggggGACCcgGGGgCGGCGCGGGUc -3'
miRNA:   3'- -CGGCa------CUGGuaCUCgGCCGUGCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.