miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 5' -58.5 NC_003521.1 + 87513 1.09 0.002614
Target:  5'- gGCCGUGACCAUGAGCCGGCACGAGCUg -3'
miRNA:   3'- -CGGCACUGGUACUCGGCCGUGCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 64746 0.8 0.213258
Target:  5'- cGCCGUGGCCAaGAcgccgGCCGGCGCG-GCa -3'
miRNA:   3'- -CGGCACUGGUaCU-----CGGCCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 150728 0.78 0.296492
Target:  5'- gGCCGUgGGCCAcguccUGGGCCGGCugcccggacugcuccGCGAGCg -3'
miRNA:   3'- -CGGCA-CUGGU-----ACUCGGCCG---------------UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 138697 0.78 0.300458
Target:  5'- gGCCGUGAgCC-UGGG-CGGCACGGGCg -3'
miRNA:   3'- -CGGCACU-GGuACUCgGCCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 17353 0.78 0.307157
Target:  5'- cCCG-GGCCGUGAcGCCGGCGCG-GCg -3'
miRNA:   3'- cGGCaCUGGUACU-CGGCCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 115370 0.77 0.34236
Target:  5'- cGUCGcUGGCCA-GGGCCGGCAUGuGCa -3'
miRNA:   3'- -CGGC-ACUGGUaCUCGGCCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 130177 0.77 0.349741
Target:  5'- gGCCGUGACCGU--GCCGGCGCccGGCg -3'
miRNA:   3'- -CGGCACUGGUAcuCGGCCGUGc-UCGa -5'
14179 5' -58.5 NC_003521.1 + 45295 0.76 0.357234
Target:  5'- cGCCGcugGGCCAgGAGCCGGagccCGAGCUg -3'
miRNA:   3'- -CGGCa--CUGGUaCUCGGCCgu--GCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 53338 0.76 0.380383
Target:  5'- cGUCGUGACCAccacGCCGGCGCG-GCg -3'
miRNA:   3'- -CGGCACUGGUacu-CGGCCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 29918 0.74 0.455553
Target:  5'- cCCGUGGCCGUcaaGGGCCuGGCACG-GCc -3'
miRNA:   3'- cGGCACUGGUA---CUCGG-CCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 36816 0.74 0.472428
Target:  5'- gGCCGUGaucacgcGCCAcGGGCCGGCGCu-GCUg -3'
miRNA:   3'- -CGGCAC-------UGGUaCUCGGCCGUGcuCGA- -5'
14179 5' -58.5 NC_003521.1 + 23095 0.74 0.49144
Target:  5'- uCCGUGGCCGggcgggGGGCCGGgACG-GCa -3'
miRNA:   3'- cGGCACUGGUa-----CUCGGCCgUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 151521 0.73 0.509869
Target:  5'- cGCCGUcGGCCA-GAGgCGGCGCGGacGCg -3'
miRNA:   3'- -CGGCA-CUGGUaCUCgGCCGUGCU--CGa -5'
14179 5' -58.5 NC_003521.1 + 208751 0.73 0.509869
Target:  5'- gGCCGUGGCCAcGGGCCaGUACGuGGUc -3'
miRNA:   3'- -CGGCACUGGUaCUCGGcCGUGC-UCGa -5'
14179 5' -58.5 NC_003521.1 + 148891 0.73 0.518256
Target:  5'- gGCCGUGGCCGacgccgagGAGCgccgccgCGGCAuCGAGCa -3'
miRNA:   3'- -CGGCACUGGUa-------CUCG-------GCCGU-GCUCGa -5'
14179 5' -58.5 NC_003521.1 + 104909 0.73 0.519192
Target:  5'- gGCCGUGGCCGa-GGCCGGCACaaagacggggGAGUc -3'
miRNA:   3'- -CGGCACUGGUacUCGGCCGUG----------CUCGa -5'
14179 5' -58.5 NC_003521.1 + 37416 0.73 0.519192
Target:  5'- gGCC-UGACCGUGuGGCgCGGCGcCGAGCc -3'
miRNA:   3'- -CGGcACUGGUAC-UCG-GCCGU-GCUCGa -5'
14179 5' -58.5 NC_003521.1 + 60691 0.73 0.519192
Target:  5'- gGCCGcgcggggGACCcgGGGgCGGCGCGGGUc -3'
miRNA:   3'- -CGGCa------CUGGuaCUCgGCCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 193150 0.72 0.56094
Target:  5'- uGCCGUGucgucggcgcacagcAUCucagGAGCCGGCGgGAGCg -3'
miRNA:   3'- -CGGCAC---------------UGGua--CUCGGCCGUgCUCGa -5'
14179 5' -58.5 NC_003521.1 + 103675 0.72 0.56671
Target:  5'- gGCCGcGGCCAUG-GCgGGCGagucCGAGCg -3'
miRNA:   3'- -CGGCaCUGGUACuCGgCCGU----GCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.