miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 5' -58.5 NC_003521.1 + 674 0.67 0.843734
Target:  5'- gGCCGacGCCAUGAGCCaGCGCuuuccGCg -3'
miRNA:   3'- -CGGCacUGGUACUCGGcCGUGcu---CGa -5'
14179 5' -58.5 NC_003521.1 + 980 0.67 0.835939
Target:  5'- gGCCGgcgGucugcucCCGUGGGCCGGCcguACG-GCUu -3'
miRNA:   3'- -CGGCa--Cu------GGUACUCGGCCG---UGCuCGA- -5'
14179 5' -58.5 NC_003521.1 + 1505 0.67 0.866043
Target:  5'- cGCCaacccuggGUGAUCcUGGGCUccuGGCAgGAGCUg -3'
miRNA:   3'- -CGG--------CACUGGuACUCGG---CCGUgCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 4244 0.66 0.905366
Target:  5'- gGCUGgcuGCCGUGAGauGGCacacgGCGAGCa -3'
miRNA:   3'- -CGGCac-UGGUACUCggCCG-----UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 5829 0.68 0.831181
Target:  5'- uGCCGggucccggcGACCG-GGGCCcuuuuaugcgauccgGGCGCGGGCa -3'
miRNA:   3'- -CGGCa--------CUGGUaCUCGG---------------CCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 7225 0.67 0.843734
Target:  5'- cGCCGgaGAUCAUGgcgccguucugaAGCCGGCACu-GCUc -3'
miRNA:   3'- -CGGCa-CUGGUAC------------UCGGCCGUGcuCGA- -5'
14179 5' -58.5 NC_003521.1 + 12922 0.7 0.683518
Target:  5'- cGCUGguggcggGACCA-GGGCCGGgAgGAGCa -3'
miRNA:   3'- -CGGCa------CUGGUaCUCGGCCgUgCUCGa -5'
14179 5' -58.5 NC_003521.1 + 17353 0.78 0.307157
Target:  5'- cCCG-GGCCGUGAcGCCGGCGCG-GCg -3'
miRNA:   3'- cGGCaCUGGUACU-CGGCCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 18074 0.71 0.633833
Target:  5'- cGCCGUGGCCGU-AGCCcagacGGCGCgcgagauGAGCg -3'
miRNA:   3'- -CGGCACUGGUAcUCGG-----CCGUG-------CUCGa -5'
14179 5' -58.5 NC_003521.1 + 19155 0.7 0.702782
Target:  5'- cGUgGUGACCGaGAGCaCGGCGCuGGUg -3'
miRNA:   3'- -CGgCACUGGUaCUCG-GCCGUGcUCGa -5'
14179 5' -58.5 NC_003521.1 + 22194 0.68 0.785858
Target:  5'- gGCCGUGGCCGcuuaccGCCGcGCGCuGGCg -3'
miRNA:   3'- -CGGCACUGGUacu---CGGC-CGUGcUCGa -5'
14179 5' -58.5 NC_003521.1 + 23095 0.74 0.49144
Target:  5'- uCCGUGGCCGggcgggGGGCCGGgACG-GCa -3'
miRNA:   3'- cGGCACUGGUa-----CUCGGCCgUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 23324 0.7 0.693173
Target:  5'- aCCGUGGCCAUGcaGGCCaccuGCACGuuccuGCUg -3'
miRNA:   3'- cGGCACUGGUAC--UCGGc---CGUGCu----CGA- -5'
14179 5' -58.5 NC_003521.1 + 23629 0.68 0.811567
Target:  5'- cGCCGUGGCCugccUGGGC-GGCAUGGa-- -3'
miRNA:   3'- -CGGCACUGGu---ACUCGgCCGUGCUcga -5'
14179 5' -58.5 NC_003521.1 + 29918 0.74 0.455553
Target:  5'- cCCGUGGCCGUcaaGGGCCuGGCACG-GCc -3'
miRNA:   3'- cGGCACUGGUA---CUCGG-CCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 32278 0.68 0.819848
Target:  5'- uGCCGUGAgCCGUGAcCuCGGCcgaAUGGGCc -3'
miRNA:   3'- -CGGCACU-GGUACUcG-GCCG---UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 36816 0.74 0.472428
Target:  5'- gGCCGUGaucacgcGCCAcGGGCCGGCGCu-GCUg -3'
miRNA:   3'- -CGGCAC-------UGGUaCUCGGCCGUGcuCGA- -5'
14179 5' -58.5 NC_003521.1 + 36850 0.69 0.768076
Target:  5'- uGCCGgguagagcaccUGA-CGUGGGCCGGCaaGCGGGUg -3'
miRNA:   3'- -CGGC-----------ACUgGUACUCGGCCG--UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 37416 0.73 0.519192
Target:  5'- gGCC-UGACCGUGuGGCgCGGCGcCGAGCc -3'
miRNA:   3'- -CGGcACUGGUAC-UCG-GCCGU-GCUCGa -5'
14179 5' -58.5 NC_003521.1 + 45295 0.76 0.357234
Target:  5'- cGCCGcugGGCCAgGAGCCGGagccCGAGCUg -3'
miRNA:   3'- -CGGCa--CUGGUaCUCGGCCgu--GCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.