miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 214351 0.67 0.918734
Target:  5'- cGUGGaCGUCguUUCUC-UCCUCcGUUCGCUc -3'
miRNA:   3'- -CGCC-GCGG--AGGAGaAGGAG-CAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 213089 0.66 0.933936
Target:  5'- cGCGGCGCucguuCUCCUCUgUCUU--UCuGCCu -3'
miRNA:   3'- -CGCCGCG-----GAGGAGAaGGAGcaAG-CGG- -5'
14183 3' -57.6 NC_003521.1 + 212730 0.69 0.831401
Target:  5'- gGCGaGCGCCUgCUCggCUUCcc-CGCCg -3'
miRNA:   3'- -CGC-CGCGGAgGAGaaGGAGcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 212583 0.73 0.58195
Target:  5'- uCGGCGCCgUCUUCUUCCUC---CGUCa -3'
miRNA:   3'- cGCCGCGG-AGGAGAAGGAGcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 208144 0.66 0.924017
Target:  5'- cGUGGCGCCUCgauccggcagCUcCUUgCUCGacuuucCGCCg -3'
miRNA:   3'- -CGCCGCGGAG----------GA-GAAgGAGCaa----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 206960 0.67 0.918734
Target:  5'- uUGGCGCCUucCCUCUcuaucucCCUCuaUCGUCg -3'
miRNA:   3'- cGCCGCGGA--GGAGAa------GGAGcaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 205336 0.75 0.488092
Target:  5'- aCGGCGCCUCCUCggCggCGgcagcugCGCCg -3'
miRNA:   3'- cGCCGCGGAGGAGaaGgaGCaa-----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 204106 0.66 0.924017
Target:  5'- gGUGGCGCCacugcgCCUCcaccUgCUCGggccaggCGCCg -3'
miRNA:   3'- -CGCCGCGGa-----GGAGa---AgGAGCaa-----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 203439 0.67 0.907524
Target:  5'- -gGGCGCCcCCgccgCCUCGaacaccgcagUCGCCg -3'
miRNA:   3'- cgCCGCGGaGGagaaGGAGCa---------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 201973 0.66 0.935816
Target:  5'- aCGaUGCCUCguccucagccaggcuCUCUUCCUCGgaacacggCGCCg -3'
miRNA:   3'- cGCcGCGGAG---------------GAGAAGGAGCaa------GCGG- -5'
14183 3' -57.6 NC_003521.1 + 201815 0.66 0.924534
Target:  5'- gGCGGCGCCcgcuccggCCUCgacaccuaCCUUGggugguaauagcgaaUCGCCa -3'
miRNA:   3'- -CGCCGCGGa-------GGAGaa------GGAGCa--------------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 197288 0.67 0.906941
Target:  5'- cGCGGCGUCUCucggcucggccguCUCUUUCUCugaucuggUCgGCCa -3'
miRNA:   3'- -CGCCGCGGAG-------------GAGAAGGAGca------AG-CGG- -5'
14183 3' -57.6 NC_003521.1 + 197194 0.83 0.18443
Target:  5'- gGCGGCcgccGCCUCCUCcucgUCCUCGUugUCGUCg -3'
miRNA:   3'- -CGCCG----CGGAGGAGa---AGGAGCA--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 195871 0.72 0.673098
Target:  5'- cGCGGUgucGCCgcccuuccuccccgUCCUCUUCgUCGUccucgucuucguccUCGCCg -3'
miRNA:   3'- -CGCCG---CGG--------------AGGAGAAGgAGCA--------------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 195785 0.67 0.917108
Target:  5'- aGCGGCGCggcucucgaccccuUUCCUcCUUCC-CcUUCGCUc -3'
miRNA:   3'- -CGCCGCG--------------GAGGA-GAAGGaGcAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 194759 0.67 0.913236
Target:  5'- cCGcGCGCUUUCUCUucccuucuUCCUCacgUCGCUg -3'
miRNA:   3'- cGC-CGCGGAGGAGA--------AGGAGca-AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 194705 0.69 0.806059
Target:  5'- cGCGGCcgaCUCCUCUaccUCCUcCGUUuaaaaccCGCCc -3'
miRNA:   3'- -CGCCGcg-GAGGAGA---AGGA-GCAA-------GCGG- -5'
14183 3' -57.6 NC_003521.1 + 192278 0.69 0.815219
Target:  5'- aGCGGCGUCUCCaCg--C-CGUUCGUCg -3'
miRNA:   3'- -CGCCGCGGAGGaGaagGaGCAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 192108 0.67 0.907524
Target:  5'- cCGGCGUCUCCaccUCUcccggCCUCGU-CGgCu -3'
miRNA:   3'- cGCCGCGGAGG---AGAa----GGAGCAaGCgG- -5'
14183 3' -57.6 NC_003521.1 + 191168 0.69 0.836913
Target:  5'- cCGGCcCCucuccagaUCCUgUUCCUCGUcucccucguccucgUCGCCg -3'
miRNA:   3'- cGCCGcGG--------AGGAgAAGGAGCA--------------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.