miRNA display CGI


Results 21 - 40 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 218704 0.83 0.138404
Target:  5'- aGGCGGaggaGACGGCGGCGGCGgcgGGCGAg -3'
miRNA:   3'- -UCGCCg---UUGUCGUCGCCGCa--CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 218626 0.7 0.651357
Target:  5'- cAGCGcGCGGCGGUaAGCGGCcacggccGGCGGCg -3'
miRNA:   3'- -UCGC-CGUUGUCG-UCGCCGca-----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 218428 0.72 0.53417
Target:  5'- uGGCcaGCGACAGCGGCGGCaccacgGAgGACa -3'
miRNA:   3'- -UCGc-CGUUGUCGUCGCCGca----CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 218153 0.69 0.719486
Target:  5'- --gGGCGaaaaguACAGCAGCaGGUaguagGUGACGACg -3'
miRNA:   3'- ucgCCGU------UGUCGUCG-CCG-----CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 218079 0.69 0.757066
Target:  5'- aAGCa-CAGCgaGGCGGCGGCGccggUGACGAUg -3'
miRNA:   3'- -UCGccGUUG--UCGUCGCCGC----ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 216915 0.73 0.487335
Target:  5'- cGCGGUGGCAGCGGaGGCG-GuCGACc -3'
miRNA:   3'- uCGCCGUUGUCGUCgCCGCaCuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 216828 0.74 0.450425
Target:  5'- uGGCGcGCAggaggucGCAGCccGCGGCG-GACGACu -3'
miRNA:   3'- -UCGC-CGU-------UGUCGu-CGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 215658 0.67 0.818579
Target:  5'- cGCGGCGGgAGCAGCGaaaGCGcGACc-- -3'
miRNA:   3'- uCGCCGUUgUCGUCGC---CGCaCUGcug -5'
14197 3' -58.5 NC_003521.1 + 214980 0.66 0.88611
Target:  5'- uGGCGGCGGCcaggggggugcgAGcCAGCGGCGUcuCGuaACg -3'
miRNA:   3'- -UCGCCGUUG------------UC-GUCGCCGCAcuGC--UG- -5'
14197 3' -58.5 NC_003521.1 + 213108 0.7 0.690544
Target:  5'- cGCGGCucGACgcgcuGGguGUGGCGUGguGCGGCc -3'
miRNA:   3'- uCGCCG--UUG-----UCguCGCCGCAC--UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 212858 0.68 0.810202
Target:  5'- gGGgGGCAGCGGUAuggucgucgucGUGGaCGcgGGCGACg -3'
miRNA:   3'- -UCgCCGUUGUCGU-----------CGCC-GCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 212213 0.66 0.892636
Target:  5'- cGGCGuGCAGCAccacGUAGCGG-GUGAgGuCg -3'
miRNA:   3'- -UCGC-CGUUGU----CGUCGCCgCACUgCuG- -5'
14197 3' -58.5 NC_003521.1 + 210738 0.68 0.793007
Target:  5'- cGGCGcugcuacCGugAGCGGcCGGCGggGACGGCa -3'
miRNA:   3'- -UCGCc------GUugUCGUC-GCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 210434 0.76 0.360439
Target:  5'- gGGCGGCGACGGCAGCGuacUGUGcuACGAg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCc--GCAC--UGCUg -5'
14197 3' -58.5 NC_003521.1 + 209741 0.69 0.756144
Target:  5'- cAGCGGCAgccACGGCAGCcggaguaccggcuGGCaGUGgaGCGAg -3'
miRNA:   3'- -UCGCCGU---UGUCGUCG-------------CCG-CAC--UGCUg -5'
14197 3' -58.5 NC_003521.1 + 209563 0.78 0.289579
Target:  5'- uGGCGGCGACGGUGGCGGgGguccgggGGCGcACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCgCa------CUGC-UG- -5'
14197 3' -58.5 NC_003521.1 + 209089 0.72 0.572745
Target:  5'- aGGCGGCGGaGGCGGUGGCc--GCGGCg -3'
miRNA:   3'- -UCGCCGUUgUCGUCGCCGcacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 207940 0.8 0.214409
Target:  5'- cGGCGGCAGCAcCGGCGGCGcgGGCGcCa -3'
miRNA:   3'- -UCGCCGUUGUcGUCGCCGCa-CUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 207443 0.8 0.204453
Target:  5'- gAGCGGCGGCuGGCGGCGuGUGUGAgUGACg -3'
miRNA:   3'- -UCGCCGUUG-UCGUCGC-CGCACU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 205348 0.81 0.176962
Target:  5'- cGGCGGCGGCAGCuGCGcCGUGcACGACc -3'
miRNA:   3'- -UCGCCGUUGUCGuCGCcGCAC-UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.