miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 201207 0.67 0.950182
Target:  5'- -gGCCGGCG-GUCUGCUCc--CGCUGg -3'
miRNA:   3'- aaUGGCUGUgCAGGCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 190338 0.67 0.941627
Target:  5'- -cGCCGACACG-CUGUggcacgCGCCGg -3'
miRNA:   3'- aaUGGCUGUGCaGGCGagaua-GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 187421 0.67 0.941627
Target:  5'- cUGCCGACGCGccaUCC-C-CUGcUCGCCGc -3'
miRNA:   3'- aAUGGCUGUGC---AGGcGaGAU-AGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 148943 0.68 0.937013
Target:  5'- gUGCUGGCGCGUgUGCUgCUGgagggcagCGCCa -3'
miRNA:   3'- aAUGGCUGUGCAgGCGA-GAUa-------GCGGc -5'
14197 5' -55.2 NC_003521.1 + 105599 0.68 0.932172
Target:  5'- -cGCCGGCGCaG-CCGCUCaggCGCUGc -3'
miRNA:   3'- aaUGGCUGUG-CaGGCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 126956 0.68 0.932172
Target:  5'- gUGCCGcCGCGgaacCCGCgccgucGUCGCCGg -3'
miRNA:   3'- aAUGGCuGUGCa---GGCGaga---UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 167581 0.68 0.927105
Target:  5'- --gUCGuCACG-CCGCUgCUGUUGCCGc -3'
miRNA:   3'- aauGGCuGUGCaGGCGA-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 104156 0.68 0.927105
Target:  5'- --cCCGGCGCcuGUguggcuucUUGCUCUGUCGCCGc -3'
miRNA:   3'- aauGGCUGUG--CA--------GGCGAGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 227972 0.68 0.921809
Target:  5'- gUACCGcUGCGUCUGCUCg--CGCaCGu -3'
miRNA:   3'- aAUGGCuGUGCAGGCGAGauaGCG-GC- -5'
14197 5' -55.2 NC_003521.1 + 128059 0.68 0.921809
Target:  5'- -gGCCGACGCG-CCGCgcgaUGcCGCCc -3'
miRNA:   3'- aaUGGCUGUGCaGGCGag--AUaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 4355 0.68 0.921809
Target:  5'- -cGCCGGCG-GUUCGCUC-AUCGCgGc -3'
miRNA:   3'- aaUGGCUGUgCAGGCGAGaUAGCGgC- -5'
14197 5' -55.2 NC_003521.1 + 217301 0.7 0.856695
Target:  5'- -cACCGugAUGaggCUGCUCguuUCGCCGu -3'
miRNA:   3'- aaUGGCugUGCa--GGCGAGau-AGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 135892 0.72 0.744656
Target:  5'- -aACCGACgGCGUCgCGCUC-GUCGUCa -3'
miRNA:   3'- aaUGGCUG-UGCAG-GCGAGaUAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 97925 0.72 0.74371
Target:  5'- -cGCCGGCugaugGCG-CCGCUCUccaagggAUCGCCGc -3'
miRNA:   3'- aaUGGCUG-----UGCaGGCGAGA-------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 166235 0.72 0.740864
Target:  5'- -cGCCGGcCGCGggacgccgcgccgCCGCUCcGUCGCCGc -3'
miRNA:   3'- aaUGGCU-GUGCa------------GGCGAGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 124336 0.73 0.735149
Target:  5'- -gGCCGuCACGgaCGCUCUucAUCGCCGc -3'
miRNA:   3'- aaUGGCuGUGCagGCGAGA--UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 129433 0.73 0.706152
Target:  5'- -aGCCGcugcaGCGCGUCCcCUCcGUCGCCGc -3'
miRNA:   3'- aaUGGC-----UGUGCAGGcGAGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 221942 0.74 0.626803
Target:  5'- aUGCaCGACACGUCCagGCg--GUCGCCGu -3'
miRNA:   3'- aAUG-GCUGUGCAGG--CGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 72469 0.75 0.5969
Target:  5'- cUGCCGcuACGCG-CCGCUCU-UCGCCa -3'
miRNA:   3'- aAUGGC--UGUGCaGGCGAGAuAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 148817 0.66 0.97689
Target:  5'- -cGCCGcCGCGccucgccgcucccgcUCCGUUCg--CGCCGg -3'
miRNA:   3'- aaUGGCuGUGC---------------AGGCGAGauaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.