Results 41 - 60 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 102940 | 0.67 | 0.950182 |
Target: 5'- -gGCCGAgGCGUCgcgguccaggCGCUCgggCGUCGg -3' miRNA: 3'- aaUGGCUgUGCAG----------GCGAGauaGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 212499 | 0.67 | 0.950182 |
Target: 5'- -cACCGGCG-GUCCGCaggccgCGCCGg -3' miRNA: 3'- aaUGGCUGUgCAGGCGagaua-GCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 49675 | 0.67 | 0.946016 |
Target: 5'- -gGCCGG-GCGagCGCggcgCUGUCGCCGu -3' miRNA: 3'- aaUGGCUgUGCagGCGa---GAUAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 115494 | 0.67 | 0.946016 |
Target: 5'- -gGCCG-CGUGU-CGCUCUGUgGCCGg -3' miRNA: 3'- aaUGGCuGUGCAgGCGAGAUAgCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 110088 | 0.67 | 0.946016 |
Target: 5'- -cGCCGACACGUCCcGaCUCaguUCGUa- -3' miRNA: 3'- aaUGGCUGUGCAGG-C-GAGau-AGCGgc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 70644 | 0.67 | 0.946016 |
Target: 5'- -cACCGGCACcaCCGCUCcgaaGUCGaCCa -3' miRNA: 3'- aaUGGCUGUGcaGGCGAGa---UAGC-GGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 14391 | 0.67 | 0.941627 |
Target: 5'- -aGCUGGCGCGcuacggcgugUCgCGCUCggagAUCGCCu -3' miRNA: 3'- aaUGGCUGUGC----------AG-GCGAGa---UAGCGGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 182049 | 0.67 | 0.957858 |
Target: 5'- -cGCCGGCGCGcgCCGCcCUgcaGUgGCUGg -3' miRNA: 3'- aaUGGCUGUGCa-GGCGaGA---UAgCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 38401 | 0.67 | 0.960688 |
Target: 5'- -gGCCGGC-CGUCCGUUCcccgaacgggcgGUUGCUGc -3' miRNA: 3'- aaUGGCUGuGCAGGCGAGa-----------UAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 53517 | 0.67 | 0.961374 |
Target: 5'- gUUGuCCGACGCGgCCGCUCccaccgggcUGCCGa -3' miRNA: 3'- -AAU-GGCUGUGCaGGCGAGaua------GCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 79106 | 0.67 | 0.961374 |
Target: 5'- -gACCu-CGCGcaaCCGCUCggUGUCGCCGu -3' miRNA: 3'- aaUGGcuGUGCa--GGCGAG--AUAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 238628 | 0.67 | 0.960688 |
Target: 5'- -gGCCGGC-CGUCCGUUCcccgaacgggcgGUUGCUGc -3' miRNA: 3'- aaUGGCUGuGCAGGCGAGa-----------UAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 74606 | 0.67 | 0.957858 |
Target: 5'- -gGCCGGCGCGccucgCCGC-Cg--CGCCa -3' miRNA: 3'- aaUGGCUGUGCa----GGCGaGauaGCGGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 70686 | 0.67 | 0.957858 |
Target: 5'- -aACCGACgGCGUCUGCgccgcaagCUG-CGUCGg -3' miRNA: 3'- aaUGGCUG-UGCAGGCGa-------GAUaGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 192075 | 0.67 | 0.954128 |
Target: 5'- gUUugUGAgGCGUCgGCUUgugcugcagcGUCGCCGg -3' miRNA: 3'- -AAugGCUgUGCAGgCGAGa---------UAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 152350 | 0.67 | 0.950182 |
Target: 5'- -cGCCGACGC---UGCUCUGggGCCGg -3' miRNA: 3'- aaUGGCUGUGcagGCGAGAUagCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 190338 | 0.67 | 0.941627 |
Target: 5'- -cGCCGACACG-CUGUggcacgCGCCGg -3' miRNA: 3'- aaUGGCUGUGCaGGCGagaua-GCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 187421 | 0.67 | 0.941627 |
Target: 5'- cUGCCGACGCGccaUCC-C-CUGcUCGCCGc -3' miRNA: 3'- aAUGGCUGUGC---AGGcGaGAU-AGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 109599 | 0.67 | 0.961374 |
Target: 5'- -cGCCGuCGCGacgCUGuCUCUggCGCCGg -3' miRNA: 3'- aaUGGCuGUGCa--GGC-GAGAuaGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 1294 | 0.67 | 0.961374 |
Target: 5'- -cGCCGACGaaugguUCCGCUacggCGCCGg -3' miRNA: 3'- aaUGGCUGUgc----AGGCGAgauaGCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home