miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 118587 0.68 0.937013
Target:  5'- ---aCGugGCGg-CGCUCaGUCGCCGg -3'
miRNA:   3'- aaugGCugUGCagGCGAGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 14391 0.67 0.941627
Target:  5'- -aGCUGGCGCGcuacggcgugUCgCGCUCggagAUCGCCu -3'
miRNA:   3'- aaUGGCUGUGC----------AG-GCGAGa---UAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 190338 0.67 0.941627
Target:  5'- -cGCCGACACG-CUGUggcacgCGCCGg -3'
miRNA:   3'- aaUGGCUGUGCaGGCGagaua-GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 187421 0.67 0.941627
Target:  5'- cUGCCGACGCGccaUCC-C-CUGcUCGCCGc -3'
miRNA:   3'- aAUGGCUGUGC---AGGcGaGAU-AGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 169585 0.67 0.941627
Target:  5'- -gAUCGugGCGUCUGUgCUGUCaguGCCGc -3'
miRNA:   3'- aaUGGCugUGCAGGCGaGAUAG---CGGC- -5'
14197 5' -55.2 NC_003521.1 + 110088 0.67 0.946016
Target:  5'- -cGCCGACACGUCCcGaCUCaguUCGUa- -3'
miRNA:   3'- aaUGGCUGUGCAGG-C-GAGau-AGCGgc -5'
14197 5' -55.2 NC_003521.1 + 39273 0.67 0.946016
Target:  5'- -gACCGAUACaG-CCGCgccacGUCGCCGg -3'
miRNA:   3'- aaUGGCUGUG-CaGGCGaga--UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 70644 0.67 0.946016
Target:  5'- -cACCGGCACcaCCGCUCcgaaGUCGaCCa -3'
miRNA:   3'- aaUGGCUGUGcaGGCGAGa---UAGC-GGc -5'
14197 5' -55.2 NC_003521.1 + 202617 0.67 0.946016
Target:  5'- -cAUCGGCGCcaucGUCCGCUacaucGUCGCCu -3'
miRNA:   3'- aaUGGCUGUG----CAGGCGAga---UAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 115494 0.67 0.946016
Target:  5'- -gGCCG-CGUGU-CGCUCUGUgGCCGg -3'
miRNA:   3'- aaUGGCuGUGCAgGCGAGAUAgCGGC- -5'
14197 5' -55.2 NC_003521.1 + 49675 0.67 0.946016
Target:  5'- -gGCCGG-GCGagCGCggcgCUGUCGCCGu -3'
miRNA:   3'- aaUGGCUgUGCagGCGa---GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 198807 0.67 0.950182
Target:  5'- gUGCCGGCgGCGUCUGUcgUGcCGCCGu -3'
miRNA:   3'- aAUGGCUG-UGCAGGCGagAUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 201207 0.67 0.950182
Target:  5'- -gGCCGGCG-GUCUGCUCc--CGCUGg -3'
miRNA:   3'- aaUGGCUGUgCAGGCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 152350 0.67 0.950182
Target:  5'- -cGCCGACGC---UGCUCUGggGCCGg -3'
miRNA:   3'- aaUGGCUGUGcagGCGAGAUagCGGC- -5'
14197 5' -55.2 NC_003521.1 + 102940 0.67 0.950182
Target:  5'- -gGCCGAgGCGUCgcgguccaggCGCUCgggCGUCGg -3'
miRNA:   3'- aaUGGCUgUGCAG----------GCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 123938 0.67 0.950182
Target:  5'- -cGCCGGCGCG-CCGC-CgcagccgCGCCa -3'
miRNA:   3'- aaUGGCUGUGCaGGCGaGaua----GCGGc -5'
14197 5' -55.2 NC_003521.1 + 166019 0.67 0.950182
Target:  5'- -cGCCGuC-CGUCCGCguc-UCGCCGc -3'
miRNA:   3'- aaUGGCuGuGCAGGCGagauAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 109746 0.67 0.950182
Target:  5'- -aGCCcGCGCGagCCGCg--GUCGCCGc -3'
miRNA:   3'- aaUGGcUGUGCa-GGCGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 212499 0.67 0.950182
Target:  5'- -cACCGGCG-GUCCGCaggccgCGCCGg -3'
miRNA:   3'- aaUGGCUGUgCAGGCGagaua-GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 107431 0.67 0.952576
Target:  5'- -aGCCGACGCGaaagcgcggaccgCCGCgCUGU-GCCGg -3'
miRNA:   3'- aaUGGCUGUGCa------------GGCGaGAUAgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.