miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 22378 0.69 0.885317
Target:  5'- gUGCCGGcCAUGUccuccguggugCCGCcgCUGUCGCUGg -3'
miRNA:   3'- aAUGGCU-GUGCA-----------GGCGa-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 129638 0.69 0.885317
Target:  5'- -aGCCcAC-CGUCCGCggcgCcGUCGCCGg -3'
miRNA:   3'- aaUGGcUGuGCAGGCGa---GaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 152328 0.69 0.891951
Target:  5'- -cGCUG-CGCGUgCCGCUCUAccCGCCc -3'
miRNA:   3'- aaUGGCuGUGCA-GGCGAGAUa-GCGGc -5'
14197 5' -55.2 NC_003521.1 + 184016 0.69 0.891951
Target:  5'- -gGCCGACuCGUUCGCgcgCga-CGCCGg -3'
miRNA:   3'- aaUGGCUGuGCAGGCGa--GauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 129597 0.69 0.898368
Target:  5'- -cGCCGGC-CGcgaCGCUCUaauagucgaGUCGCCGg -3'
miRNA:   3'- aaUGGCUGuGCag-GCGAGA---------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 129736 0.69 0.898368
Target:  5'- -gACgCGAgCGCGUCCGCgccgUCU-UCGCCGc -3'
miRNA:   3'- aaUG-GCU-GUGCAGGCG----AGAuAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 18703 0.69 0.910538
Target:  5'- -gGCCGGCGCGaUCCGg-CUGUgGCUGc -3'
miRNA:   3'- aaUGGCUGUGC-AGGCgaGAUAgCGGC- -5'
14197 5' -55.2 NC_003521.1 + 5544 0.68 0.921267
Target:  5'- -aGCCGGCGCGgccgCCGCcaucguuguuccgUCcGUCGCUGu -3'
miRNA:   3'- aaUGGCUGUGCa---GGCG-------------AGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 227972 0.68 0.921809
Target:  5'- gUACCGcUGCGUCUGCUCg--CGCaCGu -3'
miRNA:   3'- aAUGGCuGUGCAGGCGAGauaGCG-GC- -5'
14197 5' -55.2 NC_003521.1 + 4355 0.68 0.921809
Target:  5'- -cGCCGGCG-GUUCGCUC-AUCGCgGc -3'
miRNA:   3'- aaUGGCUGUgCAGGCGAGaUAGCGgC- -5'
14197 5' -55.2 NC_003521.1 + 128059 0.68 0.921809
Target:  5'- -gGCCGACGCG-CCGCgcgaUGcCGCCc -3'
miRNA:   3'- aaUGGCUGUGCaGGCGag--AUaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 115521 0.68 0.921809
Target:  5'- -cACCGcCGCGUCCGCgaacgacgCggcUCGCCu -3'
miRNA:   3'- aaUGGCuGUGCAGGCGa-------Gau-AGCGGc -5'
14197 5' -55.2 NC_003521.1 + 164966 0.68 0.921809
Target:  5'- -gGCCGugACGaaCGUgCUGUCGCCc -3'
miRNA:   3'- aaUGGCugUGCagGCGaGAUAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 167581 0.68 0.927105
Target:  5'- --gUCGuCACG-CCGCUgCUGUUGCCGc -3'
miRNA:   3'- aauGGCuGUGCaGGCGA-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 104156 0.68 0.927105
Target:  5'- --cCCGGCGCcuGUguggcuucUUGCUCUGUCGCCGc -3'
miRNA:   3'- aauGGCUGUG--CA--------GGCGAGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 126956 0.68 0.932172
Target:  5'- gUGCCGcCGCGgaacCCGCgccgucGUCGCCGg -3'
miRNA:   3'- aAUGGCuGUGCa---GGCGaga---UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 105599 0.68 0.932172
Target:  5'- -cGCCGGCGCaG-CCGCUCaggCGCUGc -3'
miRNA:   3'- aaUGGCUGUG-CaGGCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 186519 0.68 0.932172
Target:  5'- -aGCaCGACGCG-CUGCUCUacGUgGCCa -3'
miRNA:   3'- aaUG-GCUGUGCaGGCGAGA--UAgCGGc -5'
14197 5' -55.2 NC_003521.1 + 203966 0.68 0.935104
Target:  5'- cUUGCCGGCccACGUCagguGCUCUAcccggcacagcagCGCCGg -3'
miRNA:   3'- -AAUGGCUG--UGCAGg---CGAGAUa------------GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 148943 0.68 0.937013
Target:  5'- gUGCUGGCGCGUgUGCUgCUGgagggcagCGCCa -3'
miRNA:   3'- aAUGGCUGUGCAgGCGA-GAUa-------GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.