miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 70733 0.66 0.970691
Target:  5'- gUACCGGCAcuuCGUCCaGCUgcagcgCGCCGc -3'
miRNA:   3'- aAUGGCUGU---GCAGG-CGAgaua--GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 72469 0.75 0.5969
Target:  5'- cUGCCGcuACGCG-CCGCUCU-UCGCCa -3'
miRNA:   3'- aAUGGC--UGUGCaGGCGAGAuAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 73278 1.06 0.008491
Target:  5'- aUUACCGACACGUCCGCUCUAUCGCCGu -3'
miRNA:   3'- -AAUGGCUGUGCAGGCGAGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 74606 0.67 0.957858
Target:  5'- -gGCCGGCGCGccucgCCGC-Cg--CGCCa -3'
miRNA:   3'- aaUGGCUGUGCa----GGCGaGauaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 79106 0.67 0.961374
Target:  5'- -gACCu-CGCGcaaCCGCUCggUGUCGCCGu -3'
miRNA:   3'- aaUGGcuGUGCa--GGCGAG--AUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 85247 0.69 0.879164
Target:  5'- -gGCCGGCGCGcaaauaacuggcuacCCGCUCcgcgCGCCGg -3'
miRNA:   3'- aaUGGCUGUGCa--------------GGCGAGaua-GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 89317 0.66 0.967786
Target:  5'- -gGCCGACGgcgguaguucacCGUCCGCgaUGUCGCa- -3'
miRNA:   3'- aaUGGCUGU------------GCAGGCGagAUAGCGgc -5'
14197 5' -55.2 NC_003521.1 + 91030 0.66 0.97593
Target:  5'- -gGCCGGC-CGUUCGCggaa-CGCCGu -3'
miRNA:   3'- aaUGGCUGuGCAGGCGagauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 97925 0.72 0.74371
Target:  5'- -cGCCGGCugaugGCG-CCGCUCUccaagggAUCGCCGc -3'
miRNA:   3'- aaUGGCUG-----UGCaGGCGAGA-------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 102940 0.67 0.950182
Target:  5'- -gGCCGAgGCGUCgcgguccaggCGCUCgggCGUCGg -3'
miRNA:   3'- aaUGGCUgUGCAG----------GCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 104156 0.68 0.927105
Target:  5'- --cCCGGCGCcuGUguggcuucUUGCUCUGUCGCCGc -3'
miRNA:   3'- aauGGCUGUG--CA--------GGCGAGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 105599 0.68 0.932172
Target:  5'- -cGCCGGCGCaG-CCGCUCaggCGCUGc -3'
miRNA:   3'- aaUGGCUGUG-CaGGCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 107431 0.67 0.952576
Target:  5'- -aGCCGACGCGaaagcgcggaccgCCGCgCUGU-GCCGg -3'
miRNA:   3'- aaUGGCUGUGCa------------GGCGaGAUAgCGGC- -5'
14197 5' -55.2 NC_003521.1 + 108234 0.66 0.963711
Target:  5'- -cGCCGACGcCG-CCGCUUccaucaucuucuggUGUCGaCCGg -3'
miRNA:   3'- aaUGGCUGU-GCaGGCGAG--------------AUAGC-GGC- -5'
14197 5' -55.2 NC_003521.1 + 109599 0.67 0.961374
Target:  5'- -cGCCGuCGCGacgCUGuCUCUggCGCCGg -3'
miRNA:   3'- aaUGGCuGUGCa--GGC-GAGAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 109746 0.67 0.950182
Target:  5'- -aGCCcGCGCGagCCGCg--GUCGCCGc -3'
miRNA:   3'- aaUGGcUGUGCa-GGCGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 109924 0.66 0.970691
Target:  5'- gUUGCCuGACGgGgggUCGaUCUGUCGCCGc -3'
miRNA:   3'- -AAUGG-CUGUgCa--GGCgAGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 110088 0.67 0.946016
Target:  5'- -cGCCGACACGUCCcGaCUCaguUCGUa- -3'
miRNA:   3'- aaUGGCUGUGCAGG-C-GAGau-AGCGgc -5'
14197 5' -55.2 NC_003521.1 + 111707 0.66 0.967786
Target:  5'- -cGCCGACGuccaGUCCGUg----CGCCGg -3'
miRNA:   3'- aaUGGCUGUg---CAGGCGagauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 112885 0.72 0.781661
Target:  5'- -gGCCGACgACGUcagCCGCgagAUCGCCGc -3'
miRNA:   3'- aaUGGCUG-UGCA---GGCGagaUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.