miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 190544 0.66 0.973404
Target:  5'- ---aCGGCAUGUCCGUgaag-CGCCGc -3'
miRNA:   3'- aaugGCUGUGCAGGCGagauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 190338 0.67 0.941627
Target:  5'- -cGCCGACACG-CUGUggcacgCGCCGg -3'
miRNA:   3'- aaUGGCUGUGCaGGCGagaua-GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 187421 0.67 0.941627
Target:  5'- cUGCCGACGCGccaUCC-C-CUGcUCGCCGc -3'
miRNA:   3'- aAUGGCUGUGC---AGGcGaGAU-AGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 186519 0.68 0.932172
Target:  5'- -aGCaCGACGCG-CUGCUCUacGUgGCCa -3'
miRNA:   3'- aaUG-GCUGUGCaGGCGAGA--UAgCGGc -5'
14197 5' -55.2 NC_003521.1 + 184016 0.69 0.891951
Target:  5'- -gGCCGACuCGUUCGCgcgCga-CGCCGg -3'
miRNA:   3'- aaUGGCUGuGCAGGCGa--GauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 182049 0.67 0.957858
Target:  5'- -cGCCGGCGCGcgCCGCcCUgcaGUgGCUGg -3'
miRNA:   3'- aaUGGCUGUGCa-GGCGaGA---UAgCGGC- -5'
14197 5' -55.2 NC_003521.1 + 180052 0.67 0.957858
Target:  5'- -aGCCGcaGCAUG-CCGCaCUGUCGCaCGa -3'
miRNA:   3'- aaUGGC--UGUGCaGGCGaGAUAGCG-GC- -5'
14197 5' -55.2 NC_003521.1 + 169585 0.67 0.941627
Target:  5'- -gAUCGugGCGUCUGUgCUGUCaguGCCGc -3'
miRNA:   3'- aaUGGCugUGCAGGCGaGAUAG---CGGC- -5'
14197 5' -55.2 NC_003521.1 + 168960 0.73 0.696355
Target:  5'- -cGCCGuCGCucCCGCUgCUGUCGCCGa -3'
miRNA:   3'- aaUGGCuGUGcaGGCGA-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 167581 0.68 0.927105
Target:  5'- --gUCGuCACG-CCGCUgCUGUUGCCGc -3'
miRNA:   3'- aauGGCuGUGCaGGCGA-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 166235 0.72 0.740864
Target:  5'- -cGCCGGcCGCGggacgccgcgccgCCGCUCcGUCGCCGc -3'
miRNA:   3'- aaUGGCU-GUGCa------------GGCGAGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 166019 0.67 0.950182
Target:  5'- -cGCCGuC-CGUCCGCguc-UCGCCGc -3'
miRNA:   3'- aaUGGCuGuGCAGGCGagauAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 164966 0.68 0.921809
Target:  5'- -gGCCGugACGaaCGUgCUGUCGCCc -3'
miRNA:   3'- aaUGGCugUGCagGCGaGAUAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 164496 0.74 0.636788
Target:  5'- -cACCGuCGCcUCCGCagCUGUCGCCGc -3'
miRNA:   3'- aaUGGCuGUGcAGGCGa-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 161201 0.7 0.864154
Target:  5'- -cGCCGAgGCG-CCGCg--GUCGCCc -3'
miRNA:   3'- aaUGGCUgUGCaGGCGagaUAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 152350 0.67 0.950182
Target:  5'- -cGCCGACGC---UGCUCUGggGCCGg -3'
miRNA:   3'- aaUGGCUGUGcagGCGAGAUagCGGC- -5'
14197 5' -55.2 NC_003521.1 + 152328 0.69 0.891951
Target:  5'- -cGCUG-CGCGUgCCGCUCUAccCGCCc -3'
miRNA:   3'- aaUGGCuGUGCA-GGCGAGAUa-GCGGc -5'
14197 5' -55.2 NC_003521.1 + 148943 0.68 0.937013
Target:  5'- gUGCUGGCGCGUgUGCUgCUGgagggcagCGCCa -3'
miRNA:   3'- aAUGGCUGUGCAgGCGA-GAUa-------GCGGc -5'
14197 5' -55.2 NC_003521.1 + 148817 0.66 0.97689
Target:  5'- -cGCCGcCGCGccucgccgcucccgcUCCGUUCg--CGCCGg -3'
miRNA:   3'- aaUGGCuGUGC---------------AGGCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 135892 0.72 0.744656
Target:  5'- -aACCGACgGCGUCgCGCUC-GUCGUCa -3'
miRNA:   3'- aaUGGCUG-UGCAG-GCGAGaUAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.