miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 122819 0.66 0.97593
Target:  5'- -cAgCGACACGccgCCGCUaccGUCGUCGu -3'
miRNA:   3'- aaUgGCUGUGCa--GGCGAga-UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 225757 0.66 0.973404
Target:  5'- gUGCUGuugcaGCACGcgCCGCUCgcgcucgCGCCGc -3'
miRNA:   3'- aAUGGC-----UGUGCa-GGCGAGaua----GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 53652 0.66 0.973404
Target:  5'- -gGCCGucuccGCACGuugcuUCCGCUCcUGcCGCCGc -3'
miRNA:   3'- aaUGGC-----UGUGC-----AGGCGAG-AUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 201291 0.66 0.97593
Target:  5'- -cACCGACcuGCG-CCaGCUC--UCGCCGc -3'
miRNA:   3'- aaUGGCUG--UGCaGG-CGAGauAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 53526 0.66 0.973404
Target:  5'- -gGCCGAUgguGCuGUCCGCUCcggGUCgagguGCCGc -3'
miRNA:   3'- aaUGGCUG---UG-CAGGCGAGa--UAG-----CGGC- -5'
14197 5' -55.2 NC_003521.1 + 117773 0.66 0.964682
Target:  5'- --gUCGcACACG-CUGCggaUCUAUCGCCGu -3'
miRNA:   3'- aauGGC-UGUGCaGGCG---AGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 133379 0.66 0.970691
Target:  5'- -cGCCGGCACagcgcggcgGUCCGCgcUUUcgCGUCGg -3'
miRNA:   3'- aaUGGCUGUG---------CAGGCG--AGAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 109924 0.66 0.970691
Target:  5'- gUUGCCuGACGgGgggUCGaUCUGUCGCCGc -3'
miRNA:   3'- -AAUGG-CUGUgCa--GGCgAGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 108234 0.66 0.963711
Target:  5'- -cGCCGACGcCG-CCGCUUccaucaucuucuggUGUCGaCCGg -3'
miRNA:   3'- aaUGGCUGU-GCaGGCGAG--------------AUAGC-GGC- -5'
14197 5' -55.2 NC_003521.1 + 133329 0.66 0.97593
Target:  5'- -gGCCGAagaccaGUgUGCUCUGggCGCCGg -3'
miRNA:   3'- aaUGGCUgug---CAgGCGAGAUa-GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 115494 0.67 0.946016
Target:  5'- -gGCCG-CGUGU-CGCUCUGUgGCCGg -3'
miRNA:   3'- aaUGGCuGUGCAgGCGAGAUAgCGGC- -5'
14197 5' -55.2 NC_003521.1 + 79106 0.67 0.961374
Target:  5'- -gACCu-CGCGcaaCCGCUCggUGUCGCCGu -3'
miRNA:   3'- aaUGGcuGUGCa--GGCGAG--AUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 166019 0.67 0.950182
Target:  5'- -cGCCGuC-CGUCCGCguc-UCGCCGc -3'
miRNA:   3'- aaUGGCuGuGCAGGCGagauAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 202617 0.67 0.946016
Target:  5'- -cAUCGGCGCcaucGUCCGCUacaucGUCGCCu -3'
miRNA:   3'- aaUGGCUGUG----CAGGCGAga---UAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 109746 0.67 0.950182
Target:  5'- -aGCCcGCGCGagCCGCg--GUCGCCGc -3'
miRNA:   3'- aaUGGcUGUGCa-GGCGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 152350 0.67 0.950182
Target:  5'- -cGCCGACGC---UGCUCUGggGCCGg -3'
miRNA:   3'- aaUGGCUGUGcagGCGAGAUagCGGC- -5'
14197 5' -55.2 NC_003521.1 + 192075 0.67 0.954128
Target:  5'- gUUugUGAgGCGUCgGCUUgugcugcagcGUCGCCGg -3'
miRNA:   3'- -AAugGCUgUGCAGgCGAGa---------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 70686 0.67 0.957858
Target:  5'- -aACCGACgGCGUCUGCgccgcaagCUG-CGUCGg -3'
miRNA:   3'- aaUGGCUG-UGCAGGCGa-------GAUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 74606 0.67 0.957858
Target:  5'- -gGCCGGCGCGccucgCCGC-Cg--CGCCa -3'
miRNA:   3'- aaUGGCUGUGCa----GGCGaGauaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 238628 0.67 0.960688
Target:  5'- -gGCCGGC-CGUCCGUUCcccgaacgggcgGUUGCUGc -3'
miRNA:   3'- aaUGGCUGuGCAGGCGAGa-----------UAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.