miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 133379 0.66 0.970691
Target:  5'- -cGCCGGCACagcgcggcgGUCCGCgcUUUcgCGUCGg -3'
miRNA:   3'- aaUGGCUGUG---------CAGGCG--AGAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 118734 0.66 0.970691
Target:  5'- -cACCGGCACGggCUGCag-GUUGCUGg -3'
miRNA:   3'- aaUGGCUGUGCa-GGCGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 70733 0.66 0.970691
Target:  5'- gUACCGGCAcuuCGUCCaGCUgcagcgCGCCGc -3'
miRNA:   3'- aAUGGCUGU---GCAGG-CGAgaua--GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 109924 0.66 0.970691
Target:  5'- gUUGCCuGACGgGgggUCGaUCUGUCGCCGc -3'
miRNA:   3'- -AAUGG-CUGUgCa--GGCgAGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 89317 0.66 0.967786
Target:  5'- -gGCCGACGgcgguaguucacCGUCCGCgaUGUCGCa- -3'
miRNA:   3'- aaUGGCUGU------------GCAGGCGagAUAGCGgc -5'
14197 5' -55.2 NC_003521.1 + 122535 0.66 0.967786
Target:  5'- gUugCGGCgGCGUCC-CUagagGUCGCCGc -3'
miRNA:   3'- aAugGCUG-UGCAGGcGAga--UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 132460 0.66 0.967786
Target:  5'- --uUCGGCGCGUCCGgUCa---GCCGu -3'
miRNA:   3'- aauGGCUGUGCAGGCgAGauagCGGC- -5'
14197 5' -55.2 NC_003521.1 + 111707 0.66 0.967786
Target:  5'- -cGCCGACGuccaGUCCGUg----CGCCGg -3'
miRNA:   3'- aaUGGCUGUg---CAGGCGagauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 222105 0.66 0.967786
Target:  5'- -cGCCGGCAgCGUCUcgagGCgCUG-CGCCGg -3'
miRNA:   3'- aaUGGCUGU-GCAGG----CGaGAUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 31761 0.66 0.964682
Target:  5'- -gACCGGCACaucgggGUCgCGC-CaGUCGCCGc -3'
miRNA:   3'- aaUGGCUGUG------CAG-GCGaGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 11324 0.66 0.964682
Target:  5'- -cACCGGCACGUUCGac--GUCGCUu -3'
miRNA:   3'- aaUGGCUGUGCAGGCgagaUAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 53526 0.66 0.973404
Target:  5'- -gGCCGAUgguGCuGUCCGCUCcggGUCgagguGCCGc -3'
miRNA:   3'- aaUGGCUG---UG-CAGGCGAGa--UAG-----CGGC- -5'
14197 5' -55.2 NC_003521.1 + 133329 0.66 0.97593
Target:  5'- -gGCCGAagaccaGUgUGCUCUGggCGCCGg -3'
miRNA:   3'- aaUGGCUgug---CAgGCGAGAUa-GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 190544 0.66 0.973404
Target:  5'- ---aCGGCAUGUCCGUgaag-CGCCGc -3'
miRNA:   3'- aaugGCUGUGCAGGCGagauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 225757 0.66 0.973404
Target:  5'- gUGCUGuugcaGCACGcgCCGCUCgcgcucgCGCCGc -3'
miRNA:   3'- aAUGGC-----UGUGCa-GGCGAGaua----GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 148817 0.66 0.97689
Target:  5'- -cGCCGcCGCGccucgccgcucccgcUCCGUUCg--CGCCGg -3'
miRNA:   3'- aaUGGCuGUGC---------------AGGCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 201291 0.66 0.97593
Target:  5'- -cACCGACcuGCG-CCaGCUC--UCGCCGc -3'
miRNA:   3'- aaUGGCUG--UGCaGG-CGAGauAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 41852 0.66 0.97593
Target:  5'- -gGCUGACG-GUCagcaCGCUCUcgCGCCu -3'
miRNA:   3'- aaUGGCUGUgCAG----GCGAGAuaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 53652 0.66 0.973404
Target:  5'- -gGCCGucuccGCACGuugcuUCCGCUCcUGcCGCCGc -3'
miRNA:   3'- aaUGGC-----UGUGC-----AGGCGAG-AUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 122819 0.66 0.97593
Target:  5'- -cAgCGACACGccgCCGCUaccGUCGUCGu -3'
miRNA:   3'- aaUgGCUGUGCa--GGCGAga-UAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.