miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 1063 0.66 0.97593
Target:  5'- -cACCGACcuGCG-CCaGCUC--UCGCCGc -3'
miRNA:   3'- aaUGGCUG--UGCaGG-CGAGauAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 1294 0.67 0.961374
Target:  5'- -cGCCGACGaaugguUCCGCUacggCGCCGg -3'
miRNA:   3'- aaUGGCUGUgc----AGGCGAgauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 4355 0.68 0.921809
Target:  5'- -cGCCGGCG-GUUCGCUC-AUCGCgGc -3'
miRNA:   3'- aaUGGCUGUgCAGGCGAGaUAGCGgC- -5'
14197 5' -55.2 NC_003521.1 + 5544 0.68 0.921267
Target:  5'- -aGCCGGCGCGgccgCCGCcaucguuguuccgUCcGUCGCUGu -3'
miRNA:   3'- aaUGGCUGUGCa---GGCG-------------AGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 11324 0.66 0.964682
Target:  5'- -cACCGGCACGUUCGac--GUCGCUu -3'
miRNA:   3'- aaUGGCUGUGCAGGCgagaUAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 14391 0.67 0.941627
Target:  5'- -aGCUGGCGCGcuacggcgugUCgCGCUCggagAUCGCCu -3'
miRNA:   3'- aaUGGCUGUGC----------AG-GCGAGa---UAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 18703 0.69 0.910538
Target:  5'- -gGCCGGCGCGaUCCGg-CUGUgGCUGc -3'
miRNA:   3'- aaUGGCUGUGC-AGGCgaGAUAgCGGC- -5'
14197 5' -55.2 NC_003521.1 + 22378 0.69 0.885317
Target:  5'- gUGCCGGcCAUGUccuccguggugCCGCcgCUGUCGCUGg -3'
miRNA:   3'- aAUGGCU-GUGCA-----------GGCGa-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 25333 0.7 0.871414
Target:  5'- -gGCCGGCACGUuguccCUGCUCcuggccuUCGCCu -3'
miRNA:   3'- aaUGGCUGUGCA-----GGCGAGau-----AGCGGc -5'
14197 5' -55.2 NC_003521.1 + 30227 0.66 0.97041
Target:  5'- -gGCCGuuggcgucgcgcuGCAgGUCCGCgcgGUUGCCGu -3'
miRNA:   3'- aaUGGC-------------UGUgCAGGCGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 31761 0.66 0.964682
Target:  5'- -gACCGGCACaucgggGUCgCGC-CaGUCGCCGc -3'
miRNA:   3'- aaUGGCUGUG------CAG-GCGaGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 38401 0.67 0.960688
Target:  5'- -gGCCGGC-CGUCCGUUCcccgaacgggcgGUUGCUGc -3'
miRNA:   3'- aaUGGCUGuGCAGGCGAGa-----------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 39273 0.67 0.946016
Target:  5'- -gACCGAUACaG-CCGCgccacGUCGCCGg -3'
miRNA:   3'- aaUGGCUGUG-CaGGCGaga--UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 41852 0.66 0.97593
Target:  5'- -gGCUGACG-GUCagcaCGCUCUcgCGCCu -3'
miRNA:   3'- aaUGGCUGUgCAG----GCGAGAuaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 49675 0.67 0.946016
Target:  5'- -gGCCGG-GCGagCGCggcgCUGUCGCCGu -3'
miRNA:   3'- aaUGGCUgUGCagGCGa---GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 53517 0.67 0.961374
Target:  5'- gUUGuCCGACGCGgCCGCUCccaccgggcUGCCGa -3'
miRNA:   3'- -AAU-GGCUGUGCaGGCGAGaua------GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 53526 0.66 0.973404
Target:  5'- -gGCCGAUgguGCuGUCCGCUCcggGUCgagguGCCGc -3'
miRNA:   3'- aaUGGCUG---UG-CAGGCGAGa--UAG-----CGGC- -5'
14197 5' -55.2 NC_003521.1 + 53652 0.66 0.973404
Target:  5'- -gGCCGucuccGCACGuugcuUCCGCUCcUGcCGCCGc -3'
miRNA:   3'- aaUGGC-----UGUGC-----AGGCGAG-AUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 70644 0.67 0.946016
Target:  5'- -cACCGGCACcaCCGCUCcgaaGUCGaCCa -3'
miRNA:   3'- aaUGGCUGUGcaGGCGAGa---UAGC-GGc -5'
14197 5' -55.2 NC_003521.1 + 70686 0.67 0.957858
Target:  5'- -aACCGACgGCGUCUGCgccgcaagCUG-CGUCGg -3'
miRNA:   3'- aaUGGCUG-UGCAGGCGa-------GAUaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.