miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 238628 0.67 0.960688
Target:  5'- -gGCCGGC-CGUCCGUUCcccgaacgggcgGUUGCUGc -3'
miRNA:   3'- aaUGGCUGuGCAGGCGAGa-----------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 237611 0.66 0.970691
Target:  5'- -cACCGaACACGcacacaCCGCUCggGUUGCUGu -3'
miRNA:   3'- aaUGGC-UGUGCa-----GGCGAGa-UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 233082 0.7 0.856695
Target:  5'- cUGCCGcCGCcUCCGCcgCUcgCGCCGc -3'
miRNA:   3'- aAUGGCuGUGcAGGCGa-GAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 227972 0.68 0.921809
Target:  5'- gUACCGcUGCGUCUGCUCg--CGCaCGu -3'
miRNA:   3'- aAUGGCuGUGCAGGCGAGauaGCG-GC- -5'
14197 5' -55.2 NC_003521.1 + 226893 0.66 0.964682
Target:  5'- gUACUGGCAuuUGUcuuaCCGCUCaagGUCGUCGg -3'
miRNA:   3'- aAUGGCUGU--GCA----GGCGAGa--UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 225757 0.66 0.973404
Target:  5'- gUGCUGuugcaGCACGcgCCGCUCgcgcucgCGCCGc -3'
miRNA:   3'- aAUGGC-----UGUGCa-GGCGAGaua----GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 222105 0.66 0.967786
Target:  5'- -cGCCGGCAgCGUCUcgagGCgCUG-CGCCGg -3'
miRNA:   3'- aaUGGCUGU-GCAGG----CGaGAUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 221942 0.74 0.626803
Target:  5'- aUGCaCGACACGUCCagGCg--GUCGCCGu -3'
miRNA:   3'- aAUG-GCUGUGCAGG--CGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 217301 0.7 0.856695
Target:  5'- -cACCGugAUGaggCUGCUCguuUCGCCGu -3'
miRNA:   3'- aaUGGCugUGCa--GGCGAGau-AGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 212499 0.67 0.950182
Target:  5'- -cACCGGCG-GUCCGCaggccgCGCCGg -3'
miRNA:   3'- aaUGGCUGUgCAGGCGagaua-GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 210280 0.7 0.864154
Target:  5'- -gGCCGGCGCGUCCGUaCcg-UGCCc -3'
miRNA:   3'- aaUGGCUGUGCAGGCGaGauaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 206751 0.71 0.816625
Target:  5'- -cGCCGAC-UG-CCGCcgaCUAUCGCCGa -3'
miRNA:   3'- aaUGGCUGuGCaGGCGa--GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 203966 0.68 0.935104
Target:  5'- cUUGCCGGCccACGUCagguGCUCUAcccggcacagcagCGCCGg -3'
miRNA:   3'- -AAUGGCUG--UGCAGg---CGAGAUa------------GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 202617 0.67 0.946016
Target:  5'- -cAUCGGCGCcaucGUCCGCUacaucGUCGCCu -3'
miRNA:   3'- aaUGGCUGUG----CAGGCGAga---UAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 201522 0.67 0.961374
Target:  5'- -cGCCGACGaaugguUCCGCUacggCGCCGg -3'
miRNA:   3'- aaUGGCUGUgc----AGGCGAgauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 201291 0.66 0.97593
Target:  5'- -cACCGACcuGCG-CCaGCUC--UCGCCGc -3'
miRNA:   3'- aaUGGCUG--UGCaGG-CGAGauAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 201207 0.67 0.950182
Target:  5'- -gGCCGGCG-GUCUGCUCc--CGCUGg -3'
miRNA:   3'- aaUGGCUGUgCAGGCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 198807 0.67 0.950182
Target:  5'- gUGCCGGCgGCGUCUGUcgUGcCGCCGu -3'
miRNA:   3'- aAUGGCUG-UGCAGGCGagAUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 196128 0.7 0.871414
Target:  5'- -cGCCGGCccguuuCGUCCGCUgCUggCGCUGc -3'
miRNA:   3'- aaUGGCUGu-----GCAGGCGA-GAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 192075 0.67 0.954128
Target:  5'- gUUugUGAgGCGUCgGCUUgugcugcagcGUCGCCGg -3'
miRNA:   3'- -AAugGCUgUGCAGgCGAGa---------UAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.