miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 113582 0.66 0.967786
Target:  5'- -cGCCGACGag-CCGCUCU-UCGUgGa -3'
miRNA:   3'- aaUGGCUGUgcaGGCGAGAuAGCGgC- -5'
14197 5' -55.2 NC_003521.1 + 115494 0.67 0.946016
Target:  5'- -gGCCG-CGUGU-CGCUCUGUgGCCGg -3'
miRNA:   3'- aaUGGCuGUGCAgGCGAGAUAgCGGC- -5'
14197 5' -55.2 NC_003521.1 + 115521 0.68 0.921809
Target:  5'- -cACCGcCGCGUCCGCgaacgacgCggcUCGCCu -3'
miRNA:   3'- aaUGGCuGUGCAGGCGa-------Gau-AGCGGc -5'
14197 5' -55.2 NC_003521.1 + 117531 0.67 0.957858
Target:  5'- -cGCCGAguCGcCCGCggaccugacgCUGUCGUCGc -3'
miRNA:   3'- aaUGGCUguGCaGGCGa---------GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 117773 0.66 0.964682
Target:  5'- --gUCGcACACG-CUGCggaUCUAUCGCCGu -3'
miRNA:   3'- aauGGC-UGUGCaGGCG---AGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 118207 0.7 0.841202
Target:  5'- -cGCCGAgCGCGcggCCGCcgCcGUCGCCGg -3'
miRNA:   3'- aaUGGCU-GUGCa--GGCGa-GaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 118587 0.68 0.937013
Target:  5'- ---aCGugGCGg-CGCUCaGUCGCCGg -3'
miRNA:   3'- aaugGCugUGCagGCGAGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 118734 0.66 0.970691
Target:  5'- -cACCGGCACGggCUGCag-GUUGCUGg -3'
miRNA:   3'- aaUGGCUGUGCa-GGCGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 122535 0.66 0.967786
Target:  5'- gUugCGGCgGCGUCC-CUagagGUCGCCGc -3'
miRNA:   3'- aAugGCUG-UGCAGGcGAga--UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 122650 0.66 0.975191
Target:  5'- uUUGCCGGCGggcguCGUCUGCggcggugggguggcGUCGCCGg -3'
miRNA:   3'- -AAUGGCUGU-----GCAGGCGaga-----------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 122819 0.66 0.97593
Target:  5'- -cAgCGACACGccgCCGCUaccGUCGUCGu -3'
miRNA:   3'- aaUgGCUGUGCa--GGCGAga-UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 123731 0.66 0.970691
Target:  5'- -aGgCGGCcuCGUCCGCUUUAauUCGCaCGg -3'
miRNA:   3'- aaUgGCUGu-GCAGGCGAGAU--AGCG-GC- -5'
14197 5' -55.2 NC_003521.1 + 123938 0.67 0.950182
Target:  5'- -cGCCGGCGCG-CCGC-CgcagccgCGCCa -3'
miRNA:   3'- aaUGGCUGUGCaGGCGaGaua----GCGGc -5'
14197 5' -55.2 NC_003521.1 + 124336 0.73 0.735149
Target:  5'- -gGCCGuCACGgaCGCUCUucAUCGCCGc -3'
miRNA:   3'- aaUGGCuGUGCagGCGAGA--UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 126956 0.68 0.932172
Target:  5'- gUGCCGcCGCGgaacCCGCgccgucGUCGCCGg -3'
miRNA:   3'- aAUGGCuGUGCa---GGCGaga---UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 128059 0.68 0.921809
Target:  5'- -gGCCGACGCG-CCGCgcgaUGcCGCCc -3'
miRNA:   3'- aaUGGCUGUGCaGGCGag--AUaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 129433 0.73 0.706152
Target:  5'- -aGCCGcugcaGCGCGUCCcCUCcGUCGCCGc -3'
miRNA:   3'- aaUGGC-----UGUGCAGGcGAGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 129597 0.69 0.898368
Target:  5'- -cGCCGGC-CGcgaCGCUCUaauagucgaGUCGCCGg -3'
miRNA:   3'- aaUGGCUGuGCag-GCGAGA---------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 129638 0.69 0.885317
Target:  5'- -aGCCcAC-CGUCCGCggcgCcGUCGCCGg -3'
miRNA:   3'- aaUGGcUGuGCAGGCGa---GaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 129736 0.69 0.898368
Target:  5'- -gACgCGAgCGCGUCCGCgccgUCU-UCGCCGc -3'
miRNA:   3'- aaUG-GCU-GUGCAGGCG----AGAuAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.